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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCTGCCCCATGATGCCTACAAACTACTTGCAGTACCATCTCCGATCGGAGGTGTTCTTGTGTTGTGTGCAAATACAATCCATTATCATAGTCAGgtagttttatattacttagcttttggttgtttcttgtttaaaattcaacaattccagccactccacctcaaagttctacagttactcacacatctggataccatatatatttgtag

Basic information

species Arabidopsis thaliana
transcript AT5G51660.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G51660.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: LOC_Os04g18010.2 (Oryza sativa), 5'ss of exon 5
AATCTGCCCCATGATGCCTACAAACTACTTGCAGTACCATCTCCGATCGGAGGTGTTCTTGTGTTGTGTGCAAATACAATCCATTATCATAGTCAGgtagttttatattacttagcttttggttgtttcttgtttaaaattcaacaattccagccactccacctcaaagttctaca-gttactcacacatctgga-taccatatatatttgtag
||||||||||| ||||| ||| |||| |||||||| ||  | || ||  | |||||||||||| | ||||||||| | |||||||| |||||||||||   || ||         | |||   |  | | || | ||    ||            |||  |  |  |  | ||  | ||   |||   || || | | |  | | |  ||||||
AATCTGCCCCACGATGCATACCAACTTCTTGCAGTGCCTCCCCCTATTAGTGGTGTTCTTGTGATCTGTGCAAATTCCATCCATTACCATAGTCAGgt---ttgatc--------cctttaaatact-cgtggtgaaggcaca-----------tactttattttgatttgctgaacgtggatcattgatttgaagttctctttgttattgtag

upper sequence: AT5G51660.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G455115_T01 (Zea mays), 5'ss of exon 6
AATCTGCCCCATGATGCCTACAAACTACTTGCAGTACCATCTCCGATCGGAGGTGTTCTTGTGTTGTGTGCAAATACAATCCATTATCATAGTCAGgtagttttatattacttagcttttggttgtttcttgtttaaaattcaacaattccagccactccacctcaaagttctacagttactcacacatctggataccatatatatttgtag
|| || || |||||||| ||  |||| |||||||| ||  |||| ||  | ||  |||||||| | ||||||||| ||||||||||||||||||||||    || |    || ||   |    || ||| ||   |  |||||    ||        |  | ||| | |   | || | ||  |      | | |     |           
AAACTTCCACATGATGCATATCAACTTCTTGCAGTGCCCCCTCCTATAAGTGGCATTCTTGTGATCTGTGCAAATTCAATCCATTATCATAGTCAGgt----ttgtcgacctaagtactca--tggttcatggacattattcatttgtt--gattggttgagctctaggccatccattcaccaattatctttgttgttgcag----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116380073|gb|EG422665.1|EG422665
EST:     TCGGAGGTGTTCTTGTGTTGTGTGCAAATACAATCCATTATCATAGTCAG                         TCAGCCTCCTGTGCTCTGGCACTGAACAATTATGCCTCCTCAGCTGATAGC
genomic: TCGGAGGTGTTCTTGTGTTGTGTGCAAATACAATCCATTATCATAGTCAGgtagttttat ... atatttgtagTCAGCCTCCTGTGCTCTGGCACTGAACAATTATGCCTCCTCAGCTGATAGC