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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacagttttctcgcacctccccactcttcaaaacctgcttcatgcttatggatataatcttgttacctcagtcttagtttagaatcctaaagcttagaatcaactttcaacatttgtaaaactctgtttatactgttaaccacatttctatctctgtgtgcgtctgatttctttcagTCAAGAACTGCCTGCATCAAATTTCAGTGTGGAGCTTGATGCTGCCCATGGAACCTGGATATCGAACGATGTGGCCCTATTGTCGACAAAATCTGGGGAA

Basic information

species Arabidopsis thaliana
transcript AT5G51660.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G51660.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv16s0022g01860.t01 (Vitis vinifera), 3'ss of exon 7
gtacagttttctcgcacctccccactcttcaaaacctgcttcatgcttatggatataatcttgttacctcagtcttagtttagaatcctaaagcttagaatcaactttcaacatttgtaaaactctgtttatactgttaaccacatttctatctctgtgtgcgtctgatttctttcagTCAAGAACTGCCTGCATCAAATTTCAGTGTGGAGCTTGATGCTGCCCATGGAACCTGGATATCGAACGATGTGGCCCTATTGTCGACAAAATCTGGGGAA
                                                             |  |      ||| ||  | |  ||  |  |   | ||   || ||| | | ||  | | | |   ||   ||    || || ||||               ||   ||  |||||| || ||  ||||    |||| ||| ||||||||||||||||||||| ||| ||| ||| |||| || ||||||||  |  |||| |||||| | ||||| 
-------------------------------------------------------------tcctggggttgtcctatatcaagatgatttaa--tggatgtaattttaagccttctttatattaatttctaacctagaagcaaattt---------------tccatttcatttcagCCAGGAGATGCCCAGGTCAAGTTTTAGTGTGGAGCTTGATGCTGCCAATGCAACTTGGTTATCAAATGATGTGGCTATGCTGTCAACAAAAACAGGGGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116380073|gb|EG422665.1|EG422665
EST:     GCCTCCTGTGCTCTGGCACTGAACAATTATGCCTCCTCAGCTGATAGCAG                         TCAAGAACTGCCTGCATCAAATTTCAGTGTGGAGCTTGATGCTGCCCATGG
genomic: GCCTCCTGTGCTCTGGCACTGAACAATTATGCCTCCTCAGCTGATAGCAGgtacagtttt ... tttctttcagTCAAGAACTGCCTGCATCAAATTTCAGTGTGGAGCTTGATGCTGCCCATGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgtttatactgttaaccacatttctatctctgtgtgcgtctgatttctttcagTCAAGAACTGCCTGCATCAAATTTCAGTGTGGAGCTTGATGCTGCCCATGGAACCTGGATATCGAACGATGTGGCCCTATTGTCGACAAAATCTGGGGAA
                                             tttctttc  CT-rich tract
                     atttctat  TA-rich tract