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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGTTGGGACTGCGTATGTCCAAGGGGAGGATGTTGCTGCAAGGGGCCGTGTGCTTCTTTTCTCTTTTGGAAAAAATGGCGACAATTCTCAAAACGTGgtatgtttaattgggttctacaacctggggaatctttttctttcttttcattttcaccttggatgttcgatttattgtgaagccacttttctatag

Basic information

species Arabidopsis thaliana
transcript AT5G51660.1
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G51660.1 (Arabidopsis thaliana), 5'ss of exon 22
lower sequence: LOC_Os04g18010.1 (Oryza sativa), 5'ss of exon 22
---TGCTGTTGGGACTGCGTATGTCCAAGGGGAGGATGTTGCTGCAAGGGGCCGTGTGCTTCTTTTCTCTTTTGGAAAAAATGGCGACAATTCTCAAAACGTGgta-tgtttaattgggtt-ctacaacctggggaatctttttctttcttttcattttcaccttggatgttcgatttattgtgaagccacttttctatag
    ||  |||||||||| ||||| |  ||||||||||| ||||| || || ||||||||||| ||||||||    |||| ||   | |||||||||||  ||||| |||      |  ||  | |||   ||  ||   || |   |    | |  |     |||    || |||    ||| ||  ||||  | |  ||
GTTGGCCATTGGGACTGCTTATGTTCTTGGGGAGGATGTAGCTGCTAGAGGACGTGTGCTTCTGTTCTCTTTCACGAAAAGTG---AAAATTCTCAAAATCTGgtactgtgagggagcattattgcaattgggaaaaaggttattacttccgttacgtatcgattga---tttgataacatgtaaa--cactaat-tgcag

upper sequence: AT5G51660.1 (Arabidopsis thaliana), 5'ss of exon 22
lower sequence: Vv16s0022g01860.t01 (Vitis vinifera), 5'ss of exon 22
TGCTGTTGGGACTGCGTATGTCCAAGGGGAGGATGTTGCTGCAAGGGGCCGTGTGCTTCTTTTCTCTTTTGGAAAAAATGGCGACAATTCTCAAAACGTGgtatgt----ttaattgggttctac--aacctggggaatctttttctttcttttc---attttcaccttggatgttcgatttattgtgaagcca---------cttttctatag-----------------------------------------------------
 ||  |||||||||| || || |||||||||||||||||||||||||| || |||||| | || ||| |||||||||||   || ||   ||||||  |||||| |    | |  |||    | |  |  || |      ||| | ||| | ||    ||||||  |    |   | |     || || ||| |          |||  | |||                                                     
GGCCATTGGGACTGCTTACGTACAAGGGGAGGATGTTGCTGCAAGGGGACGGGTGCTTTTATTTTCTGTTGGAAAAAATACTGATAACAGTCAAAATCTGgtatttagtatcatctggagcttgcttagtctagttctgttttgtttttatatttccaattttccacaataaaacttggccagttttggagcaagcatgtatcttttcttgtagtcctcttaaacttcctgttgatgttctgtaatatttgcttttattcttttcag

upper sequence: AT5G51660.1 (Arabidopsis thaliana), 5'ss of exon 22
lower sequence: PP1S61_42V6.1 (Physcomitrella patens), 5'ss of exon 24
TGCTGTTGGGACTGCGTATGTCCAAGGGGAGGATGTTGCTGCAAGGGGCCGTGTGCTTCTTTTCTCTTTTGGAAAAAATGGCGACAATTCTCAAAACGTGgtatgtttaattgggttctacaacctggggaatcttt--ttctttcttttcattttcaccttggatgttcgatttattgtgaagccacttttctatag-----------
|||| |||| ||  ||||||| ||||||||||||||||||||||  || ||  |  | ||| ||||| |||| ||  ||    |  |  ||        ||||||| |       |||||  | || |  |||      | || | | |  |||| ||  |   ||||   ||| |  ||| |    |  |   ||||           
TGCTATTGGTACATCGTATGTACAAGGGGAGGATGTTGCTGCAAAAGGTCGGATTATACTTGTCTCTGTTGGGAAGGATCCTCAAGACCCTGGCTCATGGgtatgtat-------ttctatcatcttgaaaattcgccatgctatgtgtagatttgcatttctcatgtgtaattaa--gtggacattccatcacatagtttgtaaaatc