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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCCAAAGGGACCAATAACAATCGGTGTGACATCAGGTGCATCAACCCCGGATAAGgtatatatatatttgcagctatatttttgtttggttctcttgtttcccacacgaacatgagtgaaaatatttgtgaaaaaattacag

Basic information

species Arabidopsis thaliana
transcript AT4G34350.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G34350.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA12G05010.2 (Glycine max), 5'ss of exon 9
TATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCCAAAGGGACCAATAACAATCGGTGTGACATCAGGTGCATCAACCCCGGATAAGgta-tatatatatttgcagctatatttttgtttggttctcttgtt-tcccacacgaaca-tgagtgaaaatatttg-tgaaaaaattacag-------------------
 ||||||| ||||| ||||| |||||||  || ||| |||| ||||||||||| ||||| ||||| |||||||| || || || |||||| | | | |     | |   ||||| | |  | || |  || | | |   ||   || |   ||  ||||||   |  ||   |||                      
CATGGAGAGCTGGTGGAGAAAGAAAACTGGCTTCCAGAGGGTCCAATAACAATTGGTGTAACATCTGGTGCATCCACACCAGACAAGgtaatttctcttgactctgtagtatttctttaagtttttaatgctgtgctgtactttcactttttgttaatattcaattcaattcttaatactattctgcatcattacag

upper sequence: AT4G34350.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA11G12870.1 (Glycine max), 5'ss of exon 9
TATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCCAAAGGGACCAATAACAATCGGTGTGACATCAGGTGCATCAACCCCGGATAAGgtatatatatatttgcagctatattttt--------------gtttggttctcttgtttcccacacgaacatgagtgaaaatatttgtgaaaaaattacag-----------------
 ||||||| ||||| ||||| |||||||  || ||| |||| ||||||||||| ||||| ||||| |||||||| || || || |||||| || | | ||  | |  || |||||              ||   || || |   ||    |    |    | | ||    |||   |  |  || ||                  
CATGGAGAGCTGGTGGAGAAAGAAAACTGGCTGCCAGAGGGTCCAATAACAATTGGTGTAACATCTGGTGCATCCACACCAGACAAGgtaaatttctcttgactgtcatttttttaaatttctaatggtgtgctgtactttcactttttgctaatattcaattcaattcgtttaatactattttgcatcattggatttcaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125272974|gb|EL287059.1|EL287059
EST:     A-GGACCAATAACAATCGGTGTGACATCAGGTGCATCAACCCCGGATAAG                         GTCGTGGAAGATGCTTTGGTGAAGGTGTTCGACATTAAA
genomic: AGGGACCAATAACAATCGGTGTGACATCAGGTGCATCAACCCCGGATAAGgtatatatat ... aaaattacagGTCGTGGAAGATGCTTTGGTGAAGGTGTTCGACATTAAA
EST: gi|125248622|gb|EL262707.1|EL262707
EST:     ACCCCGGATAAG                         GTCGTGGAAGATGCTTTGGTGAAGGTGTTCGACATTAAACGTGAAGAGTTA
genomic: ACCCCGGATAAGgtatatatat ... aaaattacagGTCGTGGAAGATGCTTTGGTGAAGGTGTTCGACATTAAACGTGAAGAGTTA
EST: gi|164192324|gb|ES015716.1|ES015716
EST:     AGGGACCAATAACAATCGGTGTGACATCAGGTGCATCAACCCCGGATAAG                         GTCGTGGAAGATGCTTTGGTGAAGGTGTTCG
genomic: AGGGACCAATAACAATCGGTGTGACATCAGGTGCATCAACCCCGGATAAGgtatatatat ... aaaattacagGTCGTGGAAGATGCTTTGGTGAAGGTGTTCG
EST: gi|125091739|gb|EL149562.1|EL149562
EST:     AGGGACCAATAACAATCGGTGTGACATCAGGTGCATCAACCCCGGATAAG                         GTCGTGGAAGATGCTTTGGTGAAGGTGTTCGACATTAAACGTGAAGAGTT
genomic: AGGGACCAATAACAATCGGTGTGACATCAGGTGCATCAACCCCGGATAAGgtatatatat ... aaaattacagGTCGTGGAAGATGCTTTGGTGAAGGTGTTCGACATTAAACGTGAAGAGTT
EST: gi|125030811|gb|EL103080.1|EL103080
EST:     AGGGACCAATAACAATCGGTGTGACATCAGGTGCATCAACCCCGGATAAG                         GTCGTGGAAGATGCTTTGGTGAAGGTGTTCGACATTAAACGTGAAGAGTTA
genomic: AGGGACCAATAACAATCGGTGTGACATCAGGTGCATCAACCCCGGATAAGgtatatatat ... aaaattacagGTCGTGGAAGATGCTTTGGTGAAGGTGTTCGACATTAAACGTGAAGAGTTA
EST: gi|86084844|gb|DR380603.1|DR380603
EST:     AGGGACCAATAACAATCGGTGTGACATCAGGTGCATCAACCCCGGATAAG                         GTCGTGGAAGATGCTTTGGTGAAGGTGTTCGACATTAAACGTGAAGAGTTA
genomic: AGGGACCAATAACAATCGGTGTGACATCAGGTGCATCAACCCCGGATAAGgtatatatat ... aaaattacagGTCGTGGAAGATGCTTTGGTGAAGGTGTTCGACATTAAACGTGAAGAGTTA
EST: gi|86078647|gb|DR374404.1|DR374404
EST:     AGGGACCAATAACAATCGGTGTGACATCAGGTGCATCAACCCCGGATAAG                         GTCGTGGAAGATGCTTTGGTGAAGGTGTTCGACATTAAACGTGAAGAGTTA
genomic: AGGGACCAATAACAATCGGTGTGACATCAGGTGCATCAACCCCGGATAAGgtatatatat ... aaaattacagGTCGTGGAAGATGCTTTGGTGAAGGTGTTCGACATTAAACGTGAAGAGTTA
EST: gi|125297888|gb|EL311973.1|EL311973
EST:     AGGGACCAATAACAATCGGTGTGACATCAGGTGCATCAACCCCGGATAAG                         GTCGTGGAAGATGCTTTGGTGAAGGTGTTCGACATTAAACG
genomic: AGGGACCAATAACAATCGGTGTGACATCAGGTGCATCAACCCCGGATAAGgtatatatat ... aaaattacagGTCGTGGAAGATGCTTTGGTGAAGGTGTTCGACATTAAACG
EST: gi|86036637|gb|DR332390.1|DR332390
EST:     AGGGACCAATAACAATCGGTGTGACATCAGGTGCATCAACCCCGGATAAG                         GTCGTGGAAGATGCTTTGGTGAAGGTGTTCGACATTAAACGTGAAGAGTTA
genomic: AGGGACCAATAACAATCGGTGTGACATCAGGTGCATCAACCCCGGATAAGgtatatatat ... aaaattacagGTCGTGGAAGATGCTTTGGTGAAGGTGTTCGACATTAAACGTGAAGAGTTA
EST: gi|124994570|gb|EL066839.1|EL066839
EST:     AGGGACCAATAACAATCGGTGTGACATCAGGTGCATCAACCCCGGATAAG                         GTCGTGGAAGATGCTTTGGTGAAGGTGTTCGACATTAAACG
genomic: AGGGACCAATAACAATCGGTGTGACATCAGGTGCATCAACCCCGGATAAGgtatatatat ... aaaattacagGTCGTGGAAGATGCTTTGGTGAAGGTGTTCGACATTAAACG