1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgtaagcttattttgctaattctttgtatcattctggtttttctaatctctatgttggcgttgtagAAATTCAAATACGCAATTTCGAAGGGTTTCGATCCCGACAATGACCTTGTCAAAGTTGGTATTGCAAACCAAACAACGATGCTAAAGGGAGAAACAGAGG
species | Arabidopsis thaliana |
transcript | AT4G34350.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCGGTGGCCAATACGATGGATCTAGCTCCACAAAAGAGGAGTTCNTGGAG AAATTCAAATACGCAATTTCGAAGGEST: gi|125311108|gb|EL325193.1|EL325193
genomic: TCGGTGGCCAATACGATGGATCTAGCTCCACAAAAGAGGAGTTCATGGAGgtatgtaagc ... ggcgttgtagAAATTCAAATACGCAATTTCGAAGG
EST: TCGGTGGCCAATACGATGGATCTAGCTCCACAAAAGAGGAGTTCATGGAG AAATTCAAATACGCAATTTCGAAGGGTTTCGATCCCGACAATGACCTTGTEST: gi|125106173|gb|EL159720.1|EL159720
genomic: TCGGTGGCCAATACGATGGATCTAGCTCCACAAAAGAGGAGTTCATGGAGgtatgtaagc ... ggcgttgtagAAATTCAAATACGCAATTTCGAAGGGTTTCGATCCCGACAATGACCTTGT
EST: CCAATACGATGGATCTAGCTCCACAAAAGAGGAGTTCATGGAG AAATTCAAATACGCAATTTCGAAGGGTTTCGATCCCGACAATGACCTTGTCEST: gi|124907685|gb|EH981765.1|EH981765
genomic: CCAATACGATGGATCTAGCTCCACAAAAGAGGAGTTCATGGAGgtatgtaagc ... ggcgttgtagAAATTCAAATACGCAATTTCGAAGGGTTTCGATCCCGACAATGACCTTGTC
EST: TCGGTGGCCAATACGATGGATCTAGCTCCACAAAAGAGGAGTTCATGGAG AAATTCAAATACGEST: gi|116447470|gb|EG490062.1|EG490062
genomic: TCGGTGGCCAATACGATGGATCTAGCTCCACAAAAGAGGAGTTCATGGAGgtatgtaagc ... ggcgttgtagAAATTCAAATACG
EST: TCGGTGGCCAATACGATGGATCTAGCTCCACAAAAGAGGAGTTCATGGAG AAATTCAAATACGCAATTTCGAAGGGTTTCGATCCCGACAATGACCTTGTCEST: gi|124915862|gb|EH989736.1|EH989736
genomic: TCGGTGGCCAATACGATGGATCTAGCTCCACAAAAGAGGAGTTCATGGAGgtatgtaagc ... ggcgttgtagAAATTCAAATACGCAATTTCGAAGGGTTTCGATCCCGACAATGACCTTGTC
EST: TCGGTGGCCAATACGATGGATCTAGCTCCACAAAAGAGGAGTTCATGGAG AAATTCAAATACGCAATTTCGAAGGGTTTCGATCCCGACAATGACCTTGEST: gi|124984531|gb|EL057183.1|EL057183
genomic: TCGGTGGCCAATACGATGGATCTAGCTCCACAAAAGAGGAGTTCATGGAGgtatgtaagc ... ggcgttgtagAAATTCAAATACGCAATTTCGAAGGGTTTCGATCCCGACAATGACCTTG
EST: CGATGGATCTAGCTCCACAAAAGAGGAGTTCATGGAG AAATTCAAATACGCAATTTCGAAGGGTTTCGATCCCGACAATGACCTTGTCEST: gi|124930561|gb|EL007998.1|EL007998
genomic: CGATGGATCTAGCTCCACAAAAGAGGAGTTCATGGAGgtatgtaagc ... ggcgttgtagAAATTCAAATACGCAATTTCGAAGGGTTTCGATCCCGACAATGACCTTGTC
EST: CGATGGATCTAGCTCCACAAAAGAGGAGTTCATGGAG AAATTCAAATACGCAATTTCGAAGGGTTTCGATCCCGAACAATGACCTTGTEST: gi|125218099|gb|EL232182.1|EL232182
genomic: CGATGGATCTAGCTCCACAAAAGAGGAGTTCATGGAGgtatgtaagc ... ggcgttgtagAAATTCAAATACGCAATTTCGAAGGGTTTCGATCCCGA-CAATGACCTTGT
EST: TCGGTGGCCAATACGATGGATCTAGCTCCACAAAAGAGGAGTTCATGGAG AAATTCAAATACGCAATTTCGAAGGGTTTCGATCCCGACAATGACCTEST: gi|124976864|gb|EL050249.1|EL050249
genomic: TCGGTGGCCAATACGATGGATCTAGCTCCACAAAAGAGGAGTTCATGGAGgtatgtaagc ... ggcgttgtagAAATTCAAATACGCAATTTCGAAGGGTTTCGATCCCGACAATGACCT
EST: TACGATGGATCTAGCTCCACAAAAGAGGAGTTCATGGAG AGATTCAAATACGCAATTTCGAAGGGTTTCGATCCCGACAATGACCTTGTCEST: gi|86036634|gb|DR332387.1|DR332387
genomic: TACGATGGATCTAGCTCCACAAAAGAGGAGTTCATGGAGgtatgtaagc ... ggcgttgtagAAATTCAAATACGCAATTTCGAAGGGTTTCGATCCCGACAATGACCTTGTC
EST: TCGGTGGCCAATACGATGGATCTAGCTCCACAAAAGAGGAGTTCATGGAG AAATTCAAATACGCAATTTCGAAGGGTTTCGATCCCGACAATGACCTTGTCEST: gi|125080894|gb|EL142324.1|EL142324
genomic: TCGGTGGCCAATACGATGGATCTAGCTCCACAAAAGAGGAGTTCATGGAGgtatgtaagc ... ggcgttgtagAAATTCAAATACGCAATTTCGAAGGGTTTCGATCCCGACAATGACCTTGTC
EST: TCGGTGGCCAATACGATGGATCTAGCTCCACAAAAGAGGAGTTCATGGAG AAATTCAAATACGCAATTTCGAAGGGTTTCGATCCCGA
genomic: TCGGTGGCCAATACGATGGATCTAGCTCCACAAAAGAGGAGTTCATGGAGgtatgtaagc ... ggcgttgtagAAATTCAAATACGCAATTTCGAAGGGTTTCGATCCCGA
tttgctaattctttgtatcattctggtttttctaatctctatgttggcgttgtagAAATTCAAATACGCAATTTCGAAGGGTTTCGATCCCGACAATGACCTTGTCAAAGTTGGTATTGCAAACCAAACAACGATGCTAAAGGGAGAAACAGAGG
ttctaat putative branch site (score: 2)
tttttctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtaagcttattttgctaattctttgtatcattctggtttttctaatctctatgttggcgttgtagAAATTCAAATACGCAATTTCGAAGGGTTTCGATCCCGACAATGACCTTGTCAAAGTTGGTATTGCAAACCAAACAACGATGCTAAAGGGAGAAACAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA