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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACCTTCAGGAAATCTCAGAGGCACGGGGAATCCCATCTTACTGGATCGATAGTGAGAAACGGATAGGACCTGGGAATAAAATAGCCTATAAGCTCCACgtaagcgcatttcaaaactaacttactccttaccaaactgcattcactgattttttctattttacattgatag

Basic information

species Arabidopsis thaliana
transcript AT4G34350.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86036635|gb|DR332388.1|DR332388
EST:     ANAGTGAGAAACGGATAGGACCTGGGAATAAAATAGCCTATAAGCTCCAC                         TATGGAGAACTGGTCGAG
genomic: ATAGTGAGAAACGGATAGGACCTGGGAATAAAATAGCCTATAAGCTCCACgtaagcgcat ... acattgatagTATGGAGAACTGGTCGAG
EST: gi|124770324|gb|EH860454.1|EH860454
EST:     GGAATAAAATAGCCTATAAGCTCCAC                         TATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCCAAAGGGACCAATAACA
genomic: GGAATAAAATAGCCTATAAGCTCCACgtaagcgcat ... acattgatagTATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCCAAAGGGACCAATAACA
EST: gi|124958909|gb|EL033620.1|EL033620
EST:     AAACGGATAGGACCTGGGAATAAAATAGCCTATAAGCTCCAC                         TATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCCAAAGGGACCAATAACA
genomic: AAACGGATAGGACCTGGGAATAAAATAGCCTATAAGCTCCACgtaagcgcat ... acattgatagTATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCCAAAGGGACCAATAACA
EST: gi|125105929|gb|EL159549.1|EL159549
EST:     TAGGACCTGGGAATAAAATAGCCTATAAGCTCCAC                         TATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCCAAAGGGACCAATAACA
genomic: TAGGACCTGGGAATAAAATAGCCTATAAGCTCCACgtaagcgcat ... acattgatagTATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCCAAAGGGACCAATAACA
EST: gi|86084844|gb|DR380603.1|DR380603
EST:     ATAGTGAGAAACGGATAGGACCTGGGAATAAAATAGCCTATAAGCTCCAC                         TATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCCAAAGGGACCAATAACA
genomic: ATAGTGAGAAACGGATAGGACCTGGGAATAAAATAGCCTATAAGCTCCACgtaagcgcat ... acattgatagTATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCCAAAGGGACCAATAACA
EST: gi|124838745|gb|EH923184.1|EH923184
EST:     GAGAAACGGATAGGACCTGGGAATAAAATAGCCTATAAGCNCCAC                         TATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCCAAAGGGA
genomic: GAGAAACGGATAGGACCTGGGAATAAAATAGCCTATAAGCTCCACgtaagcgcat ... acattgatagTATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCCAAAGGGA
EST: gi|125290857|gb|EL304942.1|EL304942
EST:     ATAGTGAGAAACGGATAGGACCTGGGAATAAAATAGCCTATAAGCTCCAC                         TATGGAGAACTGGTCGAGAAGGAAAA
genomic: ATAGTGAGAAACGGATAGGACCTGGGAATAAAATAGCCTATAAGCTCCACgtaagcgcat ... acattgatagTATGGAGAACTGGTCGAGAAGGAAAA
EST: gi|124924247|gb|EL002362.1|EL002362
EST:     GAGAAACGGATAGGACCTGGGAATAAAATAGCCTATAAGCTCCAC                         TATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCCAAAGGGACCAATAA
genomic: GAGAAACGGATAGGACCTGGGAATAAAATAGCCTATAAGCTCCACgtaagcgcat ... acattgatagTATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCCAAAGGGACCAATAA
EST: gi|86078647|gb|DR374404.1|DR374404
EST:     ATAGTGAGAAACGGATAGGACCTGGGAATAAAATAGCCTATAAGCTCCAC                         TATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCCAAAGGGACCAATAACA
genomic: ATAGTGAGAAACGGATAGGACCTGGGAATAAAATAGCCTATAAGCTCCACgtaagcgcat ... acattgatagTATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCCAAAGGGACCAATAACA
EST: gi|124716968|gb|EH808370.1|EH808370
EST:     ATAGTGAGAAACGGATAGGACCTGGGAATAAAATAGCCTATAAGCTCCAC                         TATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCC
genomic: ATAGTGAGAAACGGATAGGACCTGGGAATAAAATAGCCTATAAGCTCCACgtaagcgcat ... acattgatagTATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCC
EST: gi|125148241|gb|EL182013.1|EL182013
EST:     ATAGTGAGAAACGGATAGGACCTGGGAATAAAATAGCCTATAAGCTCCAC                         TATGGAGGACTGGTCGAG
genomic: ATAGTGAGAAACGGATAGGACCTGGGAATAAAATAGCCTATAAGCTCCACgtaagcgcat ... acattgatagTATGGAGAACTGGTCGAG
EST: gi|86036637|gb|DR332390.1|DR332390
EST:     ATAGTGAGAAACGGATAGGACCTGGGAATAAAATAGCCTATAAGCTCCAC                         TATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCCAAAGGGACCAATAACA
genomic: ATAGTGAGAAACGGATAGGACCTGGGAATAAAATAGCCTATAAGCTCCACgtaagcgcat ... acattgatagTATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCCAAAGGGACCAATAACA
EST: gi|124781635|gb|EH871578.1|EH871578
EST:     AACGGATAGGACCTGGGAATAAAATAGCCTATAAGCTCCAC                         TATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCCAAAGGGACCAATAACA
genomic: AACGGATAGGACCTGGGAATAAAATAGCCTATAAGCTCCACgtaagcgcat ... acattgatagTATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCCAAAGGGACCAATAACA