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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcgtcactatactcagtaaccttactgtaaacatagctagatgcttttgctttgtggccaatcagtgtagttgaattgcatggaacattgcagAGGTTGGAAGATATGGATGTTAAAATTATTCCGGTTGAGGATTCAAAGAAACAGTTTGATGTAGTAGAGAAAGATGATGTGGTTATCCTTCCTGCGTTTG

Basic information

species Arabidopsis thaliana
transcript AT4G34350.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124722305|gb|EH813707.1|EH813707
EST:     AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAG                         AGGTTGGAAGATATGG
genomic: AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAGgtatgtcgtc ... aacattgcagAGGTTGGAAGATATGG
EST: gi|124896854|gb|EH973068.1|EH973068
EST:     AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAG                         AGGTTGGAAGATATGGATGTTAAAATTATTCCGGTTGAGGATTCAAAGAAA
genomic: AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAGgtatgtcgtc ... aacattgcagAGGTTGGAAGATATGGATGTTAAAATTATTCCGGTTGAGGATTCAAAGAAA
EST: gi|124752443|gb|EH842573.1|EH842573
EST:     AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAG                         AGGTTGGAAGATATGGATGT
genomic: AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAGgtatgtcgtc ... aacattgcagAGGTTGGAAGATATGGATGT
EST: gi|116447470|gb|EG490062.1|EG490062
EST:     AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAG                         AGGTTGGAAGATATGGATGTTAAAATTATTCCGGTTGAGGATTCAAAGAAA
genomic: AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAGgtatgtcgtc ... aacattgcagAGGTTGGAAGATATGGATGTTAAAATTATTCCGGTTGAGGATTCAAAGAAA
EST: gi|125012401|gb|EL084670.1|EL084670
EST:     AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAG                         AGGTTGGAAGATATGGATGTTAAAATTATTCCGGTTGAGGATT
genomic: AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAGgtatgtcgtc ... aacattgcagAGGTTGGAAGATATGGATGTTAAAATTATTCCGGTTGAGGATT
EST: gi|47829354|gb|CK119038.1|CK119038
EST:     AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAG                         AGGTTGGAAGATATGGATGTTAAAATTATTCCGGTTGAGGATTCAAAGAAA
genomic: AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAGgtatgtcgtc ... aacattgcagAGGTTGGAAGATATGGATGTTAAAATTATTCCGGTTGAGGATTCAAAGAAA
EST: gi|125288255|gb|EL302340.1|EL302340
EST:     AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAG                         AGGTTGGAAGATNTGGATGTTAAAATTATTCCGGTTGAGGATTCAAAAGAA
genomic: AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAGgtatgtcgtc ... aacattgcagAGGTTGGAAGATATGGATGTTAAAATTATTCCGGTTGAGGATTCAAA-GAA
EST: gi|125090493|gb|EL148460.1|EL148460
EST:     AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAG                         AGGTTGGAAGATATGGATGTTAAAATTATTCCGGTTGAGGATTCAAAGAAA
genomic: AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAGgtatgtcgtc ... aacattgcagAGGTTGGAAGATATGGATGTTAAAATTATTCCGGTTGAGGATTCAAAGAAA
EST: gi|125296443|gb|EL310528.1|EL310528
EST:     TTCATAACCCGACCGTCAATAAG                         AGGTTGGAAGATATGGATGTTAAAATTATTCCGGTTGAGGATTCAAAGAAA
genomic: TTCATAACCCGACCGTCAATAAGgtatgtcgtc ... aacattgcagAGGTTGGAAGATATGGATGTTAAAATTATTCCGGTTGAGGATTCAAAGAAA
EST: gi|124869022|gb|EH953459.1|EH953459
EST:     AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAG                         AGGTTGGAAGATA
genomic: AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAGgtatgtcgtc ... aacattgcagAGGTTGGAAGATA
EST: gi|116447469|gb|EG490061.1|EG490061
EST:     AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAG                         AGGTTGGAAGATATGGATGTTAAAATTATTCCGGTTGAGGATTCAAAGAAA
genomic: AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAGgtatgtcgtc ... aacattgcagAGGTTGGAAGATATGGATGTTAAAATTATTCCGGTTGAGGATTCAAAGAAA
EST: gi|124962519|gb|EL036939.1|EL036939
EST:     AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAG                         AGGTTGGAAGATATGGATGTTAAAATTATTCCGGTTGAGGA
genomic: AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAGgtatgtcgtc ... aacattgcagAGGTTGGAAGATATGGATGTTAAAATTATTCCGGTTGAGGA
EST: gi|47829101|gb|CK118785.1|CK118785
EST:     AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAG                         AGGTTGGAAGATATGGATG
genomic: AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAGgtatgtcgtc ... aacattgcagAGGTTGGAAGATATGGATG
EST: gi|125026093|gb|EL098362.1|EL098362
EST:     AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAG                         AGGTTGGAAGAT
genomic: AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAGgtatgtcgtc ... aacattgcagAGGTTGGAAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agatgcttttgctttgtggccaatcagtgtagttgaattgcatggaacattgcagAGGTTGGAAGATATGGATGTTAAAATTATTCCGGTTGAGGATTCAAAGAAACAGTTTGATGTAGTAGAGAAAGATGATGTGGTTATCCTTCCTGCGTTTG
                                ttgaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgtcgtcactatactcagtaaccttactgtaaacatagctagatgcttttgctttgtggccaatcagtgtagttgaattgcatggaacattgcagAGGTTGGAAGATATGGATGTTAAAATTATTCCGGTTGAGGATTCAAAGAAACAGTTTGATGTAGTAGAGAAAGATGATGTGGTTATCCTTCCTGCGTTTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG