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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGTGTTCCGTAAGAACTTGACGAGAAGCGATAATTACAATCGTAAAGGGTTCGGTCATAAGGAGGAGACACTCAAGCTCATGAATCGAGAGTACACCAgtaagttcccccaactttgctgatttgcatgctctgttttgggttgattgagctgtaatgaaatttacgaaatttgggtttgttgttgaaaaaaggatta...

Basic information

species Arabidopsis thaliana
transcript AT4G34350.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125152520|gb|EL184122.1|EL184122
EST:     GAGAGTACACCA                         GTGATATATTGGAGACACTGAAAACAAATGGGTATACTTATTCTTGGGGAG
genomic: GAGAGTACACCAgtaagttccc ... tcttgctcagGTGATATATTGGAGACACTGAAAACAAATGGGTATACTTATTCTTGGGGAG
EST: gi|125089245|gb|EL147686.1|EL147686
EST:     ATAAGGAGGAGACACTCAAGCTCATGAATCGAGAGTACACCA                         GTGATATATTGGAGACACTGAAAACAAATGGGTATACTTATTCTTGGGGAG
genomic: ATAAGGAGGAGACACTCAAGCTCATGAATCGAGAGTACACCAgtaagttccc ... tcttgctcagGTGATATATTGGAGACACTGAAAACAAATGGGTATACTTATTCTTGGGGAG
EST: gi|124794271|gb|EH883950.1|EH883950
EST:     GTTCGGTCATAAGGAGGAGACACTCAAGCTCATGAATCGAGAGTACACCA                         GTGATATATTGGAGACACTGAAAACAAATGGGTATAC
genomic: GTTCGGTCATAAGGAGGAGACACTCAAGCTCATGAATCGAGAGTACACCAgtaagttccc ... tcttgctcagGTGATATATTGGAGACACTGAAAACAAATGGGTATAC
EST: gi|116447470|gb|EG490062.1|EG490062
EST:     GTTCGGTCATAAGGAGGAGACACTCAAGCTCATGAATCGAGAGTACACCA                         GTGATATATTGGAGACACTGAAAACAAATGGGTATACTTATTCTTGGGGAG
genomic: GTTCGGTCATAAGGAGGAGACACTCAAGCTCATGAATCGAGAGTACACCAgtaagttccc ... tcttgctcagGTGATATATTGGAGACACTGAAAACAAATGGGTATACTTATTCTTGGGGAG
EST: gi|125057348|gb|EL126583.1|EL126583
EST:     AATCGAGAGTACACCA                         GTGATATATTGGAGACACTGAAAACAAATGGGTATACTTATTCTTGGGGAG
genomic: AATCGAGAGTACACCAgtaagttccc ... tcttgctcagGTGATATATTGGAGACACTGAAAACAAATGGGTATACTTATTCTTGGGGAG
EST: gi|124765748|gb|EH855878.1|EH855878
EST:     GTTCGGTCATAAGGAGGAGACACTCAAGCTCATGAATCGAGAGTACACCT                         GTGATATATTGGAGACACTGAAAACAAATGGGTAT
genomic: GTTCGGTCATAAGGAGGAGACACTCAAGCTCATGAATCGAGAGTACACCAgtaagttccc ... tcttgctcagGTGATATATTGGAGACACTGAAAACAAATGGGTAT
EST: gi|47829354|gb|CK119038.1|CK119038
EST:     GTTCGGTCATAAGGAGGAGACACTCAAGCTCATGAATCGAGAGTACACCA                         GTGATATATTGGAGACACTGAAAACAAATGGGTATACTTATTCTTGGGGAG
genomic: GTTCGGTCATAAGGAGGAGACACTCAAGCTCATGAATCGAGAGTACACCAgtaagttccc ... tcttgctcagGTGATATATTGGAGACACTGAAAACAAATGGGTATACTTATTCTTGGGGAG
EST: gi|124892184|gb|EH971086.1|EH971086
EST:     TCGGTCATAAGGAGGAGACACTCAAGCTCATGAATCGAGAGTACACCA                         GTGATATATTGGAGACACTGAAAACAAATGGGTATACTTATTCTTGGGGAG
genomic: TCGGTCATAAGGAGGAGACACTCAAGCTCATGAATCGAGAGTACACCAgtaagttccc ... tcttgctcagGTGATATATTGGAGACACTGAAAACAAATGGGTATACTTATTCTTGGGGAG
EST: gi|116447469|gb|EG490061.1|EG490061
EST:     GTTCGGTCATAAGGAGGAGACACTCAAGCTCATGAATCGAGAGTACACCA                         GTGATATATTGGAGACACTGAAAACAAATGGGTATACTTATTCTTGGGGAG
genomic: GTTCGGTCATAAGGAGGAGACACTCAAGCTCATGAATCGAGAGTACACCAgtaagttccc ... tcttgctcagGTGATATATTGGAGACACTGAAAACAAATGGGTATACTTATTCTTGGGGAG
EST: gi|125250025|gb|EL264110.1|EL264110
EST:     GTTCGGTCATAAGGAGGAGACACTCAAGCTCATGAATCGAGAGTACACCA                         GTGATATATTGGAGACACTGAAAACAAATGGGTATA
genomic: GTTCGGTCATAAGGAGGAGACACTCAAGCTCATGAATCGAGAGTACACCAgtaagttccc ... tcttgctcagGTGATATATTGGAGACACTGAAAACAAATGGGTATA
EST: gi|47829101|gb|CK118785.1|CK118785
EST:     GTTCGGTCATAAGGAGGAGACACTCAAGCTCATGAATCGAGAGTACACCA                         GTGATATATTGGAGACACTGAAAACAAATGGGTATACTTATTCTTGGGGAG
genomic: GTTCGGTCATAAGGAGGAGACACTCAAGCTCATGAATCGAGAGTACACCAgtaagttccc ... tcttgctcagGTGATATATTGGAGACACTGAAAACAAATGGGTATACTTATTCTTGGGGAG
EST: gi|86036636|gb|DR332389.1|DR332389
EST:     GTTCGGTCATAAGGAGGAGACACTCAAGCTCATGAATCGAGAGTACACCA                         GTGATATATTGGAGAACACTGAAAACAAATGGGTATACTTATTCTTNGGGA
genomic: GTTCGGTCATAAGGAGGAGACACTCAAGCTCATGAATCGAGAGTACACCAgtaagttccc ... tcttgctcagGTGATATATTGGAGA-CACTGAAAACAAATGGGTATACTTATTCTTGGGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGGTGTTCCGTAAGAACTTGACGAGAAGCGATAATTACAATCGTAAAGGGTTCGGTCATAAGGAGGAGACACTCAAGCTCATGAATCGAGAGTACACCAgtaagttcccccaactttgctgatttgcatgctctgttttgggttgattgagctgtaatgaaatttacgaaatttgggtttgttgttgaaaaaaggatta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaaa