Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGCGTGCTGTTCAGATTGCATATGAAGCACGAAAGCAGTTTCCAGAGGAGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAGgtatgtcgtcactatactcagtaaccttactgtaaacatagctagatgcttttgctttgtggccaatcagtgtagttgaattgcatggaacattgcag

Basic information

species Arabidopsis thaliana
transcript AT4G34350.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G34350.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv03s0063g02030.t01 (Vitis vinifera), 5'ss of exon 2
TGAGCGTGCTGTTCAGATTGCATATGAAGCACGAAAGCAGTTTCCAGAGGAGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAGgtatgtcgtca-ctatactcagtaacctta-----ctgtaaacatagctagatg-cttttgctttgtggccaatcagtgtagttgaattgcatggaacattgcag
 ||||||||||| || ||||| ||||||||  |||| || ||||| |||||||   |||||||||| || ||||| ||||| ||||| || || ||  |||| | | |  | || ||  ||     | ||     ||  ||    |  |   |  | ||| | || |      |    ||| ||   ||   | | |  ||    
GGAGCGTGCTGTCCAAATTGCTTATGAAGCCAGAAAACAATTTCCTGAGGAGAAAATTTGGATTACGAATGAAATTATTCACAACCCTACTGTTAACCAGgtctatagcaatctctatccaactttcataaggatcttgaattggaattcactaacctttaccttcttcttggtttcagtatttct-ttatgtaggatttt----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124722305|gb|EH813707.1|EH813707
EST:     AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAG                         AGGTTGGAAGATATGG
genomic: AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAGgtatgtcgtc ... aacattgcagAGGTTGGAAGATATGG
EST: gi|124896854|gb|EH973068.1|EH973068
EST:     AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAG                         AGGTTGGAAGATATGGATGTTAAAATTATTCCGGTTGAGGATTCAAAGAAA
genomic: AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAGgtatgtcgtc ... aacattgcagAGGTTGGAAGATATGGATGTTAAAATTATTCCGGTTGAGGATTCAAAGAAA
EST: gi|124752443|gb|EH842573.1|EH842573
EST:     AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAG                         AGGTTGGAAGATATGGATGT
genomic: AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAGgtatgtcgtc ... aacattgcagAGGTTGGAAGATATGGATGT
EST: gi|116447470|gb|EG490062.1|EG490062
EST:     AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAG                         AGGTTGGAAGATATGGATGTTAAAATTATTCCGGTTGAGGATTCAAAGAAA
genomic: AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAGgtatgtcgtc ... aacattgcagAGGTTGGAAGATATGGATGTTAAAATTATTCCGGTTGAGGATTCAAAGAAA
EST: gi|125012401|gb|EL084670.1|EL084670
EST:     AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAG                         AGGTTGGAAGATATGGATGTTAAAATTATTCCGGTTGAGGATT
genomic: AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAGgtatgtcgtc ... aacattgcagAGGTTGGAAGATATGGATGTTAAAATTATTCCGGTTGAGGATT
EST: gi|47829354|gb|CK119038.1|CK119038
EST:     AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAG                         AGGTTGGAAGATATGGATGTTAAAATTATTCCGGTTGAGGATTCAAAGAAA
genomic: AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAGgtatgtcgtc ... aacattgcagAGGTTGGAAGATATGGATGTTAAAATTATTCCGGTTGAGGATTCAAAGAAA
EST: gi|125288255|gb|EL302340.1|EL302340
EST:     AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAG                         AGGTTGGAAGATNTGGATGTTAAAATTATTCCGGTTGAGGATTCAAAAGAA
genomic: AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAGgtatgtcgtc ... aacattgcagAGGTTGGAAGATATGGATGTTAAAATTATTCCGGTTGAGGATTCAAA-GAA
EST: gi|125090493|gb|EL148460.1|EL148460
EST:     AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAG                         AGGTTGGAAGATATGGATGTTAAAATTATTCCGGTTGAGGATTCAAAGAAA
genomic: AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAGgtatgtcgtc ... aacattgcagAGGTTGGAAGATATGGATGTTAAAATTATTCCGGTTGAGGATTCAAAGAAA
EST: gi|125296443|gb|EL310528.1|EL310528
EST:     TTCATAACCCGACCGTCAATAAG                         AGGTTGGAAGATATGGATGTTAAAATTATTCCGGTTGAGGATTCAAAGAAA
genomic: TTCATAACCCGACCGTCAATAAGgtatgtcgtc ... aacattgcagAGGTTGGAAGATATGGATGTTAAAATTATTCCGGTTGAGGATTCAAAGAAA
EST: gi|124869022|gb|EH953459.1|EH953459
EST:     AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAG                         AGGTTGGAAGATA
genomic: AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAGgtatgtcgtc ... aacattgcagAGGTTGGAAGATA
EST: gi|116447469|gb|EG490061.1|EG490061
EST:     AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAG                         AGGTTGGAAGATATGGATGTTAAAATTATTCCGGTTGAGGATTCAAAGAAA
genomic: AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAGgtatgtcgtc ... aacattgcagAGGTTGGAAGATATGGATGTTAAAATTATTCCGGTTGAGGATTCAAAGAAA
EST: gi|124962519|gb|EL036939.1|EL036939
EST:     AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAG                         AGGTTGGAAGATATGGATGTTAAAATTATTCCGGTTGAGGA
genomic: AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAGgtatgtcgtc ... aacattgcagAGGTTGGAAGATATGGATGTTAAAATTATTCCGGTTGAGGA
EST: gi|47829101|gb|CK118785.1|CK118785
EST:     AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAG                         AGGTTGGAAGATATGGATG
genomic: AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAGgtatgtcgtc ... aacattgcagAGGTTGGAAGATATGGATG
EST: gi|125026093|gb|EL098362.1|EL098362
EST:     AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAG                         AGGTTGGAAGAT
genomic: AGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAGgtatgtcgtc ... aacattgcagAGGTTGGAAGAT