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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttactctaccgtttttttacatgacaatcgtcttttatccttggaaacaaaaacaccttagtttgagtctcatgccaaaaaccccacagGAAGATTACTCGAGACAACAATGATGCGCAAGTATGGAGTGGAAAATGTAAGCGGACATTTCATCAGCTTCAACACAATATGCGACGCTACTCAA

Basic information

species Arabidopsis thaliana
transcript AT4G34350.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86036635|gb|DR332388.1|DR332388
EST:     TGGTATTGCAAACCAAACAACGATGCTAAAGGGAGAAACAGAGGAGATAG                         GAAGATTACTCGAGACAACAATGATGCGCAAGTATGGAGTGGAAAATGTAA
genomic: TGGTATTGCAAACCAAACAACGATGCTAAAGGGAGAAACAGAGGAGATAGgttagttact ... aaccccacagGAAGATTACTCGAGACAACAATGATGCGCAAGTATGGAGTGGAAAATGTAA
EST: gi|125228935|gb|EL243020.1|EL243020
EST:     TGGTATTGCAAACCAAACAACGATGCTAAAGGGAGAAACAGAGGAGATAG                         GAAGATTACTCGAGACAACAATGATGCGCAAGTATGGAGTGGAAAA
genomic: TGGTATTGCAAACCAAACAACGATGCTAAAGGGAGAAACAGAGGAGATAGgttagttact ... aaccccacagGAAGATTACTCGAGACAACAATGATGCGCAAGTATGGAGTGGAAAA
EST: gi|125254527|gb|EL268612.1|EL268612
EST:     TGGTATTGCAAACCAAACAACGATGCTAAAGGGAGAAACAGAGGAGATAG                         GAAGATTACTCGAGACAACAATGATGCGCAAGTATGGAGTGGAAAA
genomic: TGGTATTGCAAACCAAACAACGATGCTAAAGGGAGAAACAGAGGAGATAGgttagttact ... aaccccacagGAAGATTACTCGAGACAACAATGATGCGCAAGTATGGAGTGGAAAA
EST: gi|164231115|gb|ES034247.1|ES034247
EST:     TGGTATTGCAAACCAAACAACGATGCTAAAGGGAGAAACAGAGGAGATAG                         GAAGATTACTCGAGACAACAATGATGCGCAAGTATGGAGTGGAAAA
genomic: TGGTATTGCAAACCAAACAACGATGCTAAAGGGAGAAACAGAGGAGATAGgttagttact ... aaccccacagGAAGATTACTCGAGACAACAATGATGCGCAAGTATGGAGTGGAAAA
EST: gi|86036634|gb|DR332387.1|DR332387
EST:     TGGTATTGCAAACCAAACAACGATGCTAAAGGGAGAAACAGAGGAGATAG                         GAAGATTACTCGA
genomic: TGGTATTGCAAACCAAACAACGATGCTAAAGGGAGAAACAGAGGAGATAGgttagttact ... aaccccacagGAAGATTACTCGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatccttggaaacaaaaacaccttagtttgagtctcatgccaaaaaccccacagGAAGATTACTCGAGACAACAATGATGCGCAAGTATGGAGTGGAAAATGTAAGCGGACATTTCATCAGCTTCAACACAATATGCGACGCTACTCAA
          aaacaaaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttagttactctaccgtttttttacatgacaatcgtcttttatccttggaaacaaaaacaccttagtttgagtctcatgccaaaaaccccacagGAAGATTACTCGAGACAACAATGATGCGCAAGTATGGAGTGGAAAATGTAAGCGGACATTTCATCAGCTTCAACACAATATGCGACGCTACTCAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TCAGCT