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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcgcatttcaaaactaacttactccttaccaaactgcattcactgattttttctattttacattgatagTATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCCAAAGGGACCAATAACAATCGGTGTGACATCAGGTGCATCAACCCCGGATAAG

Basic information

species Arabidopsis thaliana
transcript AT4G34350.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G34350.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA12G05010.2 (Glycine max), 3'ss of exon 8
-------------------gtaagcgcatttcaaaactaacttactccttaccaaactgcatt--cactgattttttctattt-tacattgat-agTATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCCAAAGGGACCAATAACAATCGGTGTGACATCAGGTGCATCAACCCCGGATAAG
                    | |   | | |||||  ||  |||   |||   |  || || |   | | ||  | |  |||| |  ||  || || ||||||| ||||| ||||| |||||||  || ||| |||| ||||||||||| ||||| ||||| |||||||| || || || |||
gtaagcatggataaagagacttataccttgtcaaagtta--ttagctcttcttagccttcactattaataataatgttaatttatttatctatcagCATGGAGAGCTGGTGGAGAAAGAAAACTGGCTTCCAGAGGGTCCAATAACAATTGGTGTAACATCTGGTGCATCCACACCAGACAAG

upper sequence: AT4G34350.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA11G12870.1 (Glycine max), 3'ss of exon 8
------------------gtaagcgcatttcaaaactaacttactccttaccaaactgcatt--cactgat--tttttctattttacattgatagTATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCCAAAGGGACCAATAACAATCGGTGTGACATCAGGTGCATCAACCCCGGATAAG
                   |     | ||   ||| | | |  ||| || | |  || || |   | | ||  | ||  | ||||    |   || ||||||| ||||| ||||| |||||||  || ||| |||| ||||||||||| ||||| ||||| |||||||| || || || |||
gtaagcatggataaagagatttataccttgtcaaagttattagctcttt-ctagccttcactattaataataatgttaattttttggtctatcagCATGGAGAGCTGGTGGAGAAAGAAAACTGGCTGCCAGAGGGTCCAATAACAATTGGTGTAACATCTGGTGCATCCACACCAGACAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86036635|gb|DR332388.1|DR332388
EST:     ANAGTGAGAAACGGATAGGACCTGGGAATAAAATAGCCTATAAGCTCCAC                         TATGGAGAACTGGTCGAG
genomic: ATAGTGAGAAACGGATAGGACCTGGGAATAAAATAGCCTATAAGCTCCACgtaagcgcat ... acattgatagTATGGAGAACTGGTCGAG
EST: gi|124770324|gb|EH860454.1|EH860454
EST:     GGAATAAAATAGCCTATAAGCTCCAC                         TATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCCAAAGGGACCAATAACA
genomic: GGAATAAAATAGCCTATAAGCTCCACgtaagcgcat ... acattgatagTATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCCAAAGGGACCAATAACA
EST: gi|124958909|gb|EL033620.1|EL033620
EST:     AAACGGATAGGACCTGGGAATAAAATAGCCTATAAGCTCCAC                         TATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCCAAAGGGACCAATAACA
genomic: AAACGGATAGGACCTGGGAATAAAATAGCCTATAAGCTCCACgtaagcgcat ... acattgatagTATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCCAAAGGGACCAATAACA
EST: gi|125105929|gb|EL159549.1|EL159549
EST:     TAGGACCTGGGAATAAAATAGCCTATAAGCTCCAC                         TATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCCAAAGGGACCAATAACA
genomic: TAGGACCTGGGAATAAAATAGCCTATAAGCTCCACgtaagcgcat ... acattgatagTATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCCAAAGGGACCAATAACA
EST: gi|86084844|gb|DR380603.1|DR380603
EST:     ATAGTGAGAAACGGATAGGACCTGGGAATAAAATAGCCTATAAGCTCCAC                         TATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCCAAAGGGACCAATAACA
genomic: ATAGTGAGAAACGGATAGGACCTGGGAATAAAATAGCCTATAAGCTCCACgtaagcgcat ... acattgatagTATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCCAAAGGGACCAATAACA
EST: gi|124838745|gb|EH923184.1|EH923184
EST:     GAGAAACGGATAGGACCTGGGAATAAAATAGCCTATAAGCNCCAC                         TATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCCAAAGGGA
genomic: GAGAAACGGATAGGACCTGGGAATAAAATAGCCTATAAGCTCCACgtaagcgcat ... acattgatagTATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCCAAAGGGA
EST: gi|125290857|gb|EL304942.1|EL304942
EST:     ATAGTGAGAAACGGATAGGACCTGGGAATAAAATAGCCTATAAGCTCCAC                         TATGGAGAACTGGTCGAGAAGGAAAA
genomic: ATAGTGAGAAACGGATAGGACCTGGGAATAAAATAGCCTATAAGCTCCACgtaagcgcat ... acattgatagTATGGAGAACTGGTCGAGAAGGAAAA
EST: gi|124924247|gb|EL002362.1|EL002362
EST:     GAGAAACGGATAGGACCTGGGAATAAAATAGCCTATAAGCTCCAC                         TATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCCAAAGGGACCAATAA
genomic: GAGAAACGGATAGGACCTGGGAATAAAATAGCCTATAAGCTCCACgtaagcgcat ... acattgatagTATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCCAAAGGGACCAATAA
EST: gi|86078647|gb|DR374404.1|DR374404
EST:     ATAGTGAGAAACGGATAGGACCTGGGAATAAAATAGCCTATAAGCTCCAC                         TATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCCAAAGGGACCAATAACA
genomic: ATAGTGAGAAACGGATAGGACCTGGGAATAAAATAGCCTATAAGCTCCACgtaagcgcat ... acattgatagTATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCCAAAGGGACCAATAACA
EST: gi|124716968|gb|EH808370.1|EH808370
EST:     ATAGTGAGAAACGGATAGGACCTGGGAATAAAATAGCCTATAAGCTCCAC                         TATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCC
genomic: ATAGTGAGAAACGGATAGGACCTGGGAATAAAATAGCCTATAAGCTCCACgtaagcgcat ... acattgatagTATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCC
EST: gi|125148241|gb|EL182013.1|EL182013
EST:     ATAGTGAGAAACGGATAGGACCTGGGAATAAAATAGCCTATAAGCTCCAC                         TATGGAGGACTGGTCGAG
genomic: ATAGTGAGAAACGGATAGGACCTGGGAATAAAATAGCCTATAAGCTCCACgtaagcgcat ... acattgatagTATGGAGAACTGGTCGAG
EST: gi|86036637|gb|DR332390.1|DR332390
EST:     ATAGTGAGAAACGGATAGGACCTGGGAATAAAATAGCCTATAAGCTCCAC                         TATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCCAAAGGGACCAATAACA
genomic: ATAGTGAGAAACGGATAGGACCTGGGAATAAAATAGCCTATAAGCTCCACgtaagcgcat ... acattgatagTATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCCAAAGGGACCAATAACA
EST: gi|124781635|gb|EH871578.1|EH871578
EST:     AACGGATAGGACCTGGGAATAAAATAGCCTATAAGCTCCAC                         TATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCCAAAGGGACCAATAACA
genomic: AACGGATAGGACCTGGGAATAAAATAGCCTATAAGCTCCACgtaagcgcat ... acattgatagTATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCCAAAGGGACCAATAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taacttactccttaccaaactgcattcactgattttttctattttacattgatagTATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCCAAAGGGACCAATAACAATCGGTGTGACATCAGGTGCATCAACCCCGGATAAG
                                ttttttctattttac  CT-rich tract
                               attttttctattttac  TA-rich tract