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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTGTCCCAATGAGAGTCCCAGTTGATGAAAGCCCTGTGTTCCTCCTGTATCAAGACTGGGCTCTTGGGCTCATCTTTTTGAAAATCTGGACTAGACTGgtaagtaattttctccaacaatcagcaacttatttccgcagaagaagatattttgtcactaaaaaacaacgtcaatggacag

Basic information

species Arabidopsis thaliana
transcript AT4G34100.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G34100.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GRMZM2G051792_T01 (Zea mays), 5'ss of exon 8
GATTGTCCCAATGAGAGTCCCAGTTGATGAAAGCCCTGTGTTCCTCCTGTATCAAGACTGGGCTCTTGGGCTCATCTTTTTGAAAATCTGGACTAGACTGgtaagtaattttctccaacaatcagcaacttatttccgcagaagaagatattttgtcactaaaaaacaacgtcaatggacag--------------------------------------------------------------------------
 || || || ||||| || ||  ||||||| |||||||| |||||  ||||||| || |||||||| ||| | || || |||||||| ||||||||||||||||||       |  |   ||| |   ||| | ||| ||  |      ||||     |||   | |||  | | |  | ||                                                                          
CATCGTACCCATGAGGGTGCCTATTGATGAGAGCCCTGTCTTCCTATTGTATCAGGATTGGGCTCTGGGGTTAATATTCTTGAAAATATGGACTAGACTGgtaagt------ttatagatatctgattcttgtgtcctcactatt---catttcccagctacttatcaatcttattctataggttagttacctatttggatatttgcattaaaataggattgagtagattgaccaacctactatgagactttccag

upper sequence: AT4G34100.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: EFJ20815 (Selaginella moellendorffii), 5'ss of exon 9
GATTGTCCCAATGAGAGTCCCAGTTGATGAAAGCCCTGTGTTCCTCCTGTATCAAGACTGGGCTCTTGGGCTCATCTTTTTGAAAATCTGGACTAGACTGgtaagtaattttctccaacaatcagcaacttatttccgcagaagaagatattttgtcactaaaaaacaacgtcaatggacag
| | || ||| || |||| || || ||||||||||| || ||| | |||||||||||||||||||| || ||| || | ||||||||||||||| |||||||| |   |||       |  ||  |    |   ||| | || |    |    | |   |   | || ||            
GGTGGTGCCACTGCGAGTGCCTGTGGATGAAAGCCCCGTCTTCTTGCTGTATCAAGACTGGGCTCTCGGACTCGTCCTCTTGAAAATCTGGACTCGACTGgtacgctgtttgt----gctgtctcctttctcactccactgatgcctttgcgctctttgttctataccacag----------

upper sequence: AT4G34100.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: EFJ32433 (Selaginella moellendorffii), 5'ss of exon 9
GATTGTCCCAATGAGAGTCCCAGTTGATGAAAGCCCTGTGTTCCTCCTGTATCAAGACTGGGCTCTTGGGCTCATCTTTTTGAAAATCTGGACTAGACTGgtaagtaattttctccaacaatcagcaacttatttccgcagaagaagatattttgtcactaaaaaacaacgtcaatggacag
| | || ||| || |||| || || ||||||||||| || ||| | |||||||||||||||||||| || ||| || | ||||||||||||||| |||||||| |  || ||      |  ||  |    |   ||| | || |    |    | |   |   | || ||            
GGTGGTGCCACTGCGAGTGCCTGTGGATGAAAGCCCCGTCTTCTTGCTGTATCAAGACTGGGCTCTCGGACTCGTCCTCTTGAAAATCTGGACTCGACTGgtacgctatatttgt--gctctctcctttctcactccactgatgcctttgcgctctttgttctataccacag----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124911895|gb|EH985975.1|EH985975
EST:     CTGGACTAGACTG                         GTAATGCTGGATCATATGCTTCCAATAGTGGATGATAG
genomic: CTGGACTAGACTGgtaagtaatt ... caatggacagGTAATGCTGGATCATATGCTTCCAATAGTGGATGATAG
EST: gi|124951783|gb|EL027118.1|EL027118
EST:     ATCTTTTTGAAAATCTGGACTAGACTG                         GTAATTGCTGGATCATATGCTTCCAATAGTGGATGATAGCTGGAGAGCAAA
genomic: ATCTTTTTGAAAATCTGGACTAGACTGgtaagtaatt ... caatggacagGTAA-TGCTGGATCATATGCTTCCAATAGTGGATGATAGCTGGAGAGCAAA