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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgttttgtgctgttaaattttcaatatacgagaaactctaaactctactaaatgtggattctgtacttttcaaatggtgattgaacagGTTTTTATCATTCCGGTGCTAATTGGACTTCTGTTTGAGCTTTTGGTGATTGTCCCAATGAGAGTCCCAGTTGATGAAAGCCCTGTGTTCCTCCTGTATC

Basic information

species Arabidopsis thaliana
transcript AT4G34100.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G34100.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GRMZM2G145104_T01 (Zea mays), 3'ss of exon 7
--------------------------------------gtaagtgttttgtgctgttaaattttcaatatacgagaaactctaaactctactaaatgtggattctgtacttttcaaatggtga--------ttgaacagGTTTTTATCATTCCGGTGCTAATTGGACTTCTGTTTGAGCTTTTGGTGATTGTCCCAATGAGAGTCCCAGTTGATGAAAGCCCTGTGTTCCTCCTGTATC
                                           |||||     |||   |  |    |||      |   |     |||    ||      || || |  |  | | | | |         |    ||| | ||| | ||||| ||||| ||||||||||| ||||||||  |||| ||||| || ||||| || ||  ||||||| |||||||| ||| |  |||| |
gtaagttcttttagactgaacttctactcgttcaactatcccctgtttgaacttgtgggagctctcttattttgatagtaccgttttctgtgtaactcttgttatggatctaaccagtagcgtcaatcttttctttcagATCTTTGTTATTCCTGTGCTGATTGGACTTCTTTTTGAGCTGCTGGTCATTGTACCCATGAGGGTGCCTATTGATGAGAGCCCTGTCTTCTTATTGTACC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124864704|gb|EH949141.1|EH949141
EST:     TCAAGAGCTCGGTGCTGTTAGCCATATGG                         G-TTTTATCATTCCGGTGCTAATTGGACTTCTGTTTGAGCTTTTGG
genomic: TCAAGAGCTCGGTGCTGTTAGCCATATGGgtaagtgttt ... gattgaacagGTTTTTATCATTCCGGTGCTAATTGGACTTCTGTTTGAGCTTTTGG
EST: gi|125073831|gb|EL138020.1|EL138020
EST:     GAGCTCGGTGCTGTTAGCCATATGG                         GTTTTTATCATTCCGGTGCTAATTGGACTTCTGTTTGAGCTTTTGGTGA
genomic: GAGCTCGGTGCTGTTAGCCATATGGgtaagtgttt ... gattgaacagGTTTTTATCATTCCGGTGCTAATTGGACTTCTGTTTGAGCTTTTGGTGA
EST: gi|125205270|gb|EL220224.1|EL220224
EST:     AGCTCGGTGCTGTTAGCCATATGG                         GTTTTTATCCTTCCGGTGCTAATTGGACTTCTGTTTGAGCTTTTGGTGATT
genomic: AGCTCGGTGCTGTTAGCCATATGGgtaagtgttt ... gattgaacagGTTTTTATCATTCCGGTGCTAATTGGACTTCTGTTTGAGCTTTTGGTGATT
EST: gi|124877369|gb|EH956806.1|EH956806
EST:     CTCGGTGCTGTTAGCCATATGG                         GTTTTTATCATTCCGGTGCTAATTGGACTTCTGTTTGAGCTTTTGGTGATT
genomic: CTCGGTGCTGTTAGCCATATGGgtaagtgttt ... gattgaacagGTTTTTATCATTCCGGTGCTAATTGGACTTCTGTTTGAGCTTTTGGTGATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactctaaactctactaaatgtggattctgtacttttcaaatggtgattgaacagGTTTTTATCATTCCGGTGCTAATTGGACTTCTGTTTGAGCTTTTGGTGATTGTCCCAATGAGAGTCCCAGTTGATGAAAGCCCTGTGTTCCTCCTGTATC
            tactaaa  putative branch site (score: 1)
                                 ttttcaaat  TA-rich tract