Sequence
atgc intronic sequence ATGC exonic sequencegtactgtgttgtccctactcattttcattctagaaatagtttttttcgctgctgctatctaaatatatcttttcactttgtgccaattgcagGTTCTTCGTCCTGGAGTTCTGTATTTCCTTCGTGATCCAGCAGATCCTAATTACAATCCATTCCGAGATTTGATTGATGATCCAGTGCACAAGCATGCTC
Basic information
species | Arabidopsis thaliana |
transcript | AT4G34100.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G34100.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G145104_T01 (Zea mays), 3'ss of exon 3
gtactgtgttgtccctactcattttcattc-tagaaatagttttt---ttcgctgctgctatctaaatatatcttttcactttgtgccaattgcagGTTCTTCGTCCTGGAGTTCTGTATTTCCTTCGTGATCCAGCAGATCCTAATTACAATCCATTCCGAGATTTGATTGATGATCCAGTGCACAAGCATGCTC
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gtattgctcagctacttgatatttcgagcaacagcactaacatttaaattctcatatgtcccatccatcttactttttaccttatt---gtggtagGTTCTGCGCAATGGAGTTCTTTATTTTCTGCGGGACCCTGCTGATCCAAATTACAATCCATTTAGGGATTTGATTGACGATCCTGTGCATAAGCATGCCC
upper sequence: AT4G34100.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G051792_T01 (Zea mays), 3'ss of exon 3
gtactgtgttgtccctactcatttt------cattctagaaatagtttttttcgctgctg--ctatctaaat--atatcttttcactttgtgccaattgcagGTTCTTCGTCCTGGAGTTCTGTATTTCCTTCGTGATCCAGCAGATCCTAATTACAATCCATTCCGAGATTTGATTGATGATCCAGTGCACAAGCATGCTC
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gtattgctcagccacttgatatttcgagaaacagcactcaaacatttaaattcccttatgtcctgtccatctcactttcttttaaccttatt---gttatagGTGCTGCGCAATGGAGTTCTTTATTTTCTGCGGGACCCTGCTGATCCAAATTACAATCCATTTAGGGATTTGATTGATGACCCTGTGCATAAACATGCCC
upper sequence: AT4G34100.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: PP1S189_9V6.1 (Physcomitrella patens), 3'ss of exon 3
-gtactgtgttgtccctactcattttcattctagaaat--agtttttttcgctgct-gctatctaaatatatcttttcact----ttgtgcca-attgcagGTTCTTCGTCCTGGAGTTCTGTATTTCCTTCGTGATCCAGCAGATCCTAATTACAATCCATTCCGAGATTTGATTGATGATCCAGTGCACAAGCATGCTC
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tgtacaa-gaaggaacaatgggtgtgggtccgaacaagggaggtgcgtgtggtgttagtcacgtgcgtttattgatccattgggattgtgttgcgttccagGTGTTGAAACCAGGGGTTTTGTATTTCCTGCGGGATCCGGCGGATCCAAACTACAACCCATTCCGGGATCTGATCGATGATCCCTTGCACAAGCATGCAC
upper sequence: AT4G34100.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: EFJ32433 (Selaginella moellendorffii), 3'ss of exon 4
gtactgtgttgtccctactcattttcattctagaaatagtttttttcgctgctgctatctaaatatatcttttcactttgtgccaattgcagGTTCTTCGTCCTGGAGTTCTGTATTTCCTTCGTGATCCAGCAGATCCTAATTACAATCCATTCCGAGATTTGATTGATGATCCAGTGCACAAGCATGCTC
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-------------------------------gtgagttgctattttttccgg-gttttctagttcatgctaatggtttta----agtttcagGTTCTCCGCCCTGGGGTCCTATATTTCTTGCGTGACCCGGCGGATCCAAATTACAATCCTTTCCGCGACTTGATTGACGATCCGCTTCATAAGCACGCTA
upper sequence: AT4G34100.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: EFJ20815 (Selaginella moellendorffii), 3'ss of exon 4
gtactgtgttgtccctactcattttcattctagaaatagtttttttcgctgctgctatctaaatatatcttttcactttgtgccaattgcagGTTCTTCGTCCTGGAGTTCTGTATTTCCTTCGTGATCCAGCAGATCCTAATTACAATCCATTCCGAGATTTGATTGATGATCCAGTGCACAAGCATGCTC
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-------------------------------gtgagttgctattttttccgg-gttttctagttcatgctaatggtttta----agtttcagGTTCTCCGCCCTGGAGTCCTATATTTCTTGCGTGACCCGGCGGATCCAAATTACAATCCTTTCCGCGACTTGATTGACGATCCGCTTCATAAGCACGCTAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125261746|gb|EL275831.1|EL275831EST: GAATCATGTACATGTTGCAAATAAGCATCTTCGTCAGCCTTCTTCGAGGG GTTCTTCGTCCTGGAGTTCTGTATTTCCTTCGTGAT
genomic: GAATCATGTACATGTTGCAAATAAGCATCTTCGTCAGCCTTCTTCGAGGGgtactgtgtt ... ccaattgcagGTTCTTCGTCCTGGAGTTCTGTATTTCCTTCGTGAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agtttttttcgctgctgctatctaaatatatcttttcactttgtgccaattgcagGTTCTTCGTCCTGGAGTTCTGTATTTCCTTCGTGATCCAGCAGATCCTAATTACAATCCATTCCGAGATTTGATTGATGATCCAGTGCACAAGCATGCTC
atctaaa putative branch site (score: 3)
tatctaaatatatctt TA-rich tract