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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTTATCAATTTCTCCTCTGGCAAGCTCACTTGTTCATTGGGTTGTTGGAATCATGTACATGTTGCAAATAAGCATCTTCGTCAGCCTTCTTCGAGGGgtactgtgttgtccctactcattttcattctagaaatagtttttttcgctgctgctatctaaatatatcttttcactttgtgccaattgcag

Basic information

species Arabidopsis thaliana
transcript AT4G34100.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G34100.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os06g43210.1 (Oryza sativa), 5'ss of exon 3
GTTTTTATCAATTTCTCCTCTGGCAAGCTCACTTGTTCATTGGGTTGTTGGAATCATGTACATGTTGCAAATAAGCATCTTCGTCAGCCTTCTTCGAGGGgtactgtgttgtccctac-tcattttcattctagaaatagttt-ttttcgctgctgctatctaaatatatcttttcactttgtgccaattgcag
 || ||  | || || ||  ||||||||||   | | |||||| ||||||| || || || ||| | ||||||||||| || ||||||||||||||||||||| ||     ||| |     | || || | |   | | ||   || ||   | |   ||    |  |  || |  |   |             
ATTCTTCACGATGTCACCCTTGGCAAGCTCCTCTATCCATTGGCTTGTTGGGATTATATATATGCTTCAAATAAGCATATTTGTCAGCCTTCTTCGAGGGgtattgctcaatccttttgctagttccactatcagattcgtaaattctcatggatctcattctcac-tgactctctatgatag-----------

upper sequence: AT4G34100.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G145104_T01 (Zea mays), 5'ss of exon 3
GTTTTTATCAATTTCTCCTCTGGCAAGCTCACTTGTTCATTGGGTTGTTGGAATCATGTACATGTTGCAAATAAGCATCTTCGTCAGCCTTCTTCGAGGGgtactgtgttgtccctactcattttcattc-tagaaatagttttt---ttcgctgctgctatctaaatatatcttttcactttgtgccaattgcag
 || ||  || | || ||  | || ||||||  | | |||||| | ||||| ||  |||| ||| | ||||||||||| || ||||||||||||||||||||| ||    |   ||    ||||  |     || | ||   |||   ||| |   ||     |  || |  ||||| || || |     | |   
ATTCTTTACAGTGTCACCCTTAGCGAGCTCATCTATCCATTGGCTAGTTGGGATTGTGTATATGCTCCAAATAAGCATATTTGTCAGCCTTCTTCGAGGGgtattgctcagctacttgatatttcgagcaacagcactaacatttaaattctcatatgtcccatccatcttactttttaccttattgtggtag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125261746|gb|EL275831.1|EL275831
EST:     GAATCATGTACATGTTGCAAATAAGCATCTTCGTCAGCCTTCTTCGAGGG                         GTTCTTCGTCCTGGAGTTCTGTATTTCCTTCGTGAT
genomic: GAATCATGTACATGTTGCAAATAAGCATCTTCGTCAGCCTTCTTCGAGGGgtactgtgtt ... ccaattgcagGTTCTTCGTCCTGGAGTTCTGTATTTCCTTCGTGAT