1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TATCGAGCATGTCAAGTCAAAGAGGACTTCAGTCTTGCTTAACCAAATATGGAAATGGTGTGGGATTGTATTCAAGAGCTCGGTGCTGTTAGCCATATGGgtaagtgttttgtgctgttaaattttcaatatacgagaaactctaaactctactaaatgtggattctgtacttttcaaatggtgattgaacag
species | Arabidopsis thaliana |
transcript | AT4G34100.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TCAAGAGCTCGGTGCTGTTAGCCATATGG G-TTTTATCATTCCGGTGCTAATTGGACTTCTGTTTGAGCTTTTGGEST: gi|125073831|gb|EL138020.1|EL138020
genomic: TCAAGAGCTCGGTGCTGTTAGCCATATGGgtaagtgttt ... gattgaacagGTTTTTATCATTCCGGTGCTAATTGGACTTCTGTTTGAGCTTTTGG
EST: GAGCTCGGTGCTGTTAGCCATATGG GTTTTTATCATTCCGGTGCTAATTGGACTTCTGTTTGAGCTTTTGGTGAEST: gi|125205270|gb|EL220224.1|EL220224
genomic: GAGCTCGGTGCTGTTAGCCATATGGgtaagtgttt ... gattgaacagGTTTTTATCATTCCGGTGCTAATTGGACTTCTGTTTGAGCTTTTGGTGA
EST: AGCTCGGTGCTGTTAGCCATATGG GTTTTTATCCTTCCGGTGCTAATTGGACTTCTGTTTGAGCTTTTGGTGATTEST: gi|124877369|gb|EH956806.1|EH956806
genomic: AGCTCGGTGCTGTTAGCCATATGGgtaagtgttt ... gattgaacagGTTTTTATCATTCCGGTGCTAATTGGACTTCTGTTTGAGCTTTTGGTGATT
EST: CTCGGTGCTGTTAGCCATATGG GTTTTTATCATTCCGGTGCTAATTGGACTTCTGTTTGAGCTTTTGGTGATT
genomic: CTCGGTGCTGTTAGCCATATGGgtaagtgttt ... gattgaacagGTTTTTATCATTCCGGTGCTAATTGGACTTCTGTTTGAGCTTTTGGTGATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATCGAGCATGTCAAGTCAAAGAGGACTTCAGTCTTGCTTAACCAAATATGGAAATGGTGTGGGATTGTATTCAAGAGCTCGGTGCTGTTAGCCATATGGgtaagtgttttgtgctgttaaattttcaatatacgagaaactctaaactctactaaatgtggattctgtacttttcaaatggtgattgaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT