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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcttactttaaaaataagctaatagcttgtttgatattaagaattttggcatacttgaataaattaacaggacttttcgcttggtatatagagttgactaagtactttaagactcccattagggcttcccctgatatgaatgtatatttttagcagGTACAACTTTGTGGTCCGGATAATTCTCCTTCTACTTGTTGCATGGGTGACTCTTCTTCTCTTCAATTCAGCATTGATAGTTGTGCCAGTTTCGCTGGGA

Basic information

species Arabidopsis thaliana
transcript AT4G34100.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124921466|gb|EH995081.1|EH995081
EST:     GTCAACACGGGTGAGGAATATGAAGATGATGACGAACAATCTGATTCTGA                         GTACAACTTTGTGGTCCGGATA
genomic: GTCAACACGGGTGAGGAATATGAAGATGATGACGAACAATCTGATTCTGAgtaagttctt ... tttttagcagGTACAACTTTGTGGTCCGGATA
EST: gi|301502712|gb|HO208252.1|HO208252
EST:     GTCAACACGGGTGAGGAATATGAAGATGATGACGAACAATCTGATTCTGA                         C
genomic: GTCAACACGGGTGAGGAATATGAAGATGATGACGAACAATCTGATTCTGAgtaagttctt ... tttttagcag-
EST: gi|301502712|gb|HO208252.1|HO208252
EST:     GTCAACACGGGTGAGGAATATGAAGATGATGACGAACAATCTGATTCTGA                         C
genomic: GTCAACACGGGTGAGGAATATGAAGATGATGACGAACAATCTGATTCTGAgtaagttctt ... tttttagcag-
EST: gi|301502712|gb|HO208252.1|HO208252
EST:     GTCAACACGGGTGAGGAATATGAAGATGATGACGAACAATCTGATTCTGA                         C
genomic: GTCAACACGGGTGAGGAATATGAAGATGATGACGAACAATCTGATTCTGAgtaagttctt ... tttttagcag-
EST: gi|124760517|gb|EH850647.1|EH850647
EST:     GGAATATGAAGATGATGACGAACAATCTGATTCTGA                         GTACAACTTTGTGGTCCGGATAATTCTCCTTCTACTTGTTGCATGGGTGAC
genomic: GGAATATGAAGATGATGACGAACAATCTGATTCTGAgtaagttctt ... tttttagcagGTACAACTTTGTGGTCCGGATAATTCTCCTTCTACTTGTTGCATGGGTGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtactttaagactcccattagggcttcccctgatatgaatgtatatttttagcagGTACAACTTTGTGGTCCGGATAATTCTCCTTCTACTTGTTGCATGGGTGACTCTTCTTCTCTTCAATTCAGCATTGATAGTTGTGCCAGTTTCGCTGGGA
                           ccctgat  putative branch site (score: 4)
                                           tattttt  putative PPT
                              tgatatgaatgtatat  TA-rich tract