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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCGCTTCGGTATCCGTGTGCCTGTAGCGGAAGTATCAAATTTGTTCACCAGGATTGTCTCCTTCAGTGGCTTAATCACAGCAACGCTCGTCAATGCGAGgttttgtttcttttcctctttattatttgattgttgagattttgaagattcgtattctaattaagatctggattcgtgttgatttgaatgccttttagga...

Basic information

species Arabidopsis thaliana
transcript AT4G34100.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G34100.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv07s0031g00230.t01 (Vitis vinifera), 5'ss of exon 1
TCCGCTTCGGTATCCGTGTGCCTGTAGCGGAAGTATCAAATTTGTTCACCAGGATTGTCTCCTTCAGTGGCTTAATCACAGCAACGCTCGTCAATGCGAGgttttgtttcttttcctctttattatttgattgttgagattttgaagattcgtattctaattaagatctggattcgtgttgatttgaatgccttttagga-
 || ||    || |||||||| ||| | || |||||||||||||||||| | ||||| ||||||||||||||| | |  || ||  |||| |  || |||||    |  | ||| | ||  |||   ||  | |   ||        |||  | || ||        || |     | ||| | |  ||     |||    
CCCTCTCTATTACCCGTGTGCTTGTCGTGGCAGTATCAAATTTGTTCACGAAGATTGCCTCCTTCAGTGGCTTGACCGTAGTAAAACTCGCCGTTGTGAGgtacactagcatttgcccta-attccgtgtatatgcggacgcactgtatttctcttttagccgttcgcttgtcgaattttggtgtatattagggttattgt

upper sequence: AT4G34100.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: PP1S189_9V6.1 (Physcomitrella patens), 5'ss of exon 1
TCCGCTTCGGTATCCGTGTGCCTGTAGCGGAAGTATCAAATTTGTTCACCAGGATTGTCTCCTTCAGTGGCTTAATCACAGCAACGCTCGTCAATGCGAGgttttgtttcttttcctctttattatttgattgttgaga-----ttttgaagattcgtattctaattaagatctggattcgtgttgatttgaatgccttttagga
  | ||     |||||||||||||||| || |||||||||| ||| |||||||| ||||| || |||||||| || ||||| || || || || ||||||||   | ||   ||       |||   ||    | |||       |||| |    | |  |     |       ||  |  ||| || | | |   |        
GTCTCTGTACCATCCGTGTGCCTGTAGTGGCAGTATCAAATATGTGCACCAGGAATGTCTTCTGCAGTGGCTCAACCACAGTAATGCGCGGCAGTGCGAGgtacggcttggattttggcagatttggtggccatggaggaagccctttgtaagggcatgcttagggttctccgcggggtgttgtagactggcagatcgga-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116475581|gb|EG518173.1|EG518173
EST:     AGGATTGTCTCCTTCAGTGGCTTAATCACAGCAACGCTCGTCAATGCGAG                         GTTTGCAAGCATCCTTTTTCATTCTCCCCAGTATATGCTGACAATGCTCCG
genomic: AGGATTGTCTCCTTCAGTGGCTTAATCACAGCAACGCTCGTCAATGCGAGgttttgtttc ... atctctgcagGTTTGCAAGCATCCTTTTTCATTCTCCCCAGTATATGCTGACAATGCTCCG
EST: gi|116475582|gb|EG518174.1|EG518174
EST:     AGGATTGTCTCCTTCAGTGGCTTAATCACAGCAACGCTCGTCAATGCGAG                         GTTTGCAAGCATCCTTTTTCATTCTCCCCAGTATATGCTGACAATGCTCCG
genomic: AGGATTGTCTCCTTCAGTGGCTTAATCACAGCAACGCTCGTCAATGCGAGgttttgtttc ... atctctgcagGTTTGCAAGCATCCTTTTTCATTCTCCCCAGTATATGCTGACAATGCTCCG