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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTTCAATTCAGCATTGATAGTTGTGCCAGTTTCGCTGGGACGTGCTCTATTCAGTGCCATTCCCATTCTTCCAATAACTCATGGCATCAAGTGCAATGgtaatgtttgttaattttgatcttctgagtcattctttggcacgggttacacattattaacagtattccctaaaaatatgtag

Basic information

species Arabidopsis thaliana
transcript AT4G34100.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G34100.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: LOC_Os06g43210.1 (Oryza sativa), 5'ss of exon 6
CTCTTCAATTCAGCATTGATAGTTGTGCCAGTTTCGCTGGGACGTGCTCTATTCAGTGCCATTCCCATTCTTCCAATAACTCATGGCATCAAGTGCAATGgtaatgtttgttaattttgatcttctgagtcattctttggcacgggttaca--cattattaacagtattccctaaaaatatgtag----------------------------------
 | |||||| | | | |||| ||| | ||| | || || || |||    | ||    || ||||||   || ||||| || ||||||||||||||||||||||||  ||| | || || || |  | | | ||| |||      | |  |   |  | || ||| ||||   ||     || |                                    
ATATTCAATGCTGGAATGATTGTTATTCCAATCTCACTTGGTCGTTTAGTTTTTGAGGCTATTCCCCGCCTGCCAATCACACATGGCATCAAGTGCAATGgtaat--ttgctgatgttaatatgttcaattattttttttgcttgatagctttccgtgttcacaatattggttatcttcatatttgctaacaccatggtaaattgtttctctttgttag

upper sequence: AT4G34100.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G051792_T01 (Zea mays), 5'ss of exon 6
CTCTTCAATTCAGCATTGATAGTTGTGCCAGTTTCGCTGGGACGTGCTCTATTCAGTGCCATTCCCATTCTTCCAATAACTCATGGCATCAAGTGCAATGgtaatgtttgttaattttgatct---tctgagtcattc---tttggcacgggttacacattattaacagtattccctaaa-aatatgtag------------------------
 | |||||| | | | |||||||| | ||  | || || || |||    | ||    ||  |||||   || ||||| || |||||||||||||||||||||||| |   |    ||  | ||   |  | || ||     |||  |  |   |    || | | |||  ||     | | || |  |                          
ATATTCAATGCTGGAATGATAGTTTTTCCTATCTCACTTGGCCGTCTGGTTTTTGAGGCTGTTCCCCGCCTGCCAATCACACATGGCATCAAGTGCAATGgtaatttgcatgtgattctacctgaattggtgttatataaatttaacttgctatgtttatgaatgacaagatcagtcatataacacatttgctgacaccttttggaactatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|301502712|gb|HO208252.1|HO208252
EST:     ATTCAGTGCCATTCCCATTCTTCCAATAACTCATGGCATCAAGTGCAATG                         ATCTGTATGCTTTCGTCATTGGCACATATGCCTTTTGGACTACCATATCTG
genomic: ATTCAGTGCCATTCCCATTCTTCCAATAACTCATGGCATCAAGTGCAATGgtaatgtttg ... aaatatgtagATCTGTATGCTTTCGTCATTGGCACATATGCCTTTTGGACTACCATATCTG
EST: gi|125092046|gb|EL149869.1|EL149869
EST:     CAGTGCCATTCCCATTCTTCCAATAACTCATGGCATCAAGTGCAATG                         ATCTGTATGCTTTCGTCATTGGCACATATGCCTTTTGGA
genomic: CAGTGCCATTCCCATTCTTCCAATAACTCATGGCATCAAGTGCAATGgtaatgtttg ... aaatatgtagATCTGTATGCTTTCGTCATTGGCACATATGCCTTTTGGA