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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgatgattctggattcatcttatttctgagtttttcacatggatgactattctccattgagtgtgagcttcaaagtttttagttttcgtgttaaaaatttaaaatttgcttctctgagcatgaagtttctatctttttccagAAAGGAGGTCCTTATCTTGCCATCTATCTGTGGGCATTCATGTTTATCCTGTCTCTAGTGATGATGACTATATACCCGGTCTTGATAGCACCGCTCTTCA

Basic information

species Arabidopsis thaliana
transcript AT4G01320.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G01320.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv15s0046g02040.t01 (Vitis vinifera), 3'ss of exon 6
--------gtttgatgattctggattcatcttatttctgagtttttcacatggatgactattctccattgagtgtgagcttcaaagtttttag---ttttcgtgttaaaaatttaaaatttgc-ttctctgagcatga-----agtttctatctttttc----cagAAAGGAGGTCCTTATCTTGCCATCTATCTGTGGGCATTCATGTTTATCCTGTCTCTAGTGATGATGACTATATACCCGGTCTTGATAGCACCGCTCTTCA
         |||| | ||  || |  || ||      |   | |  ||  | | ||   ||| ||||     | |   ||   |  ||| |      ||  |  ||    |||        || |||||| |   |||     | | |  || |  ||     |||||||||||||||||| | ||||||||||| |||| ||| |||||||| |||||| | |||||||||||  | || ||  |  | ||||| || || ||||
gtaacataatttgctaatattgaaaacagctagaggttatttgtagcatttagttg-tgattttccacatgatttagtctcttatttttctgcattcttctgctttcctcattactgtcaagcgttctctaatagtgactaacaatgttcatttgcttggtggcagAAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTGTCTATTGTGATGATGACACTGTATCCTATTCTAATAGCCCCACTTTTCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgttaaaaatttaaaatttgcttctctgagcatgaagtttctatctttttccagAAAGGAGGTCCTTATCTTGCCATCTATCTGTGGGCATTCATGTTTATCCTGTCTCTAGTGATGATGACTATATACCCGGTCTTGATAGCACCGCTCTTCA
                                      tttctatctttttcc  CT-rich tract
     aaaaatttaaaatttg  TA-rich tract