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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAATTTGGAGGATACACTCTTGTCAGAAACTCCACTGATCTCTTCAGGAGTTTCGGATTTGATACACAGCCTGTTCTCATTGGTTTGATCATATTTCAGgtttgttatttttgccttttgacactaatctaatgaatcaaggatggattaagaaaaaaaaactctaaacctttggttatatctcctgtctgattatcacag

Basic information

species Arabidopsis thaliana
transcript AT4G01320.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G01320.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv15s0046g02040.t01 (Vitis vinifera), 5'ss of exon 11
ACAATTTGGAGGATACACTCTTGTCAGAAACTCCACTGATCTCTTCAGGAGTTTCGGATTTGATACACAGCCTGTTCTCATTGGTTTGATCATATTTCAGgtttgttatttttgccttttgacactaatctaatgaatcaaggatggattaagaaaaaaaaactctaa--acctttggttatatctcctgtctgattatcacag
 |||||||||||||| || ||||| || |||||   ||| || ||    ||||| ||||||||||||||||| |||||||||||  | ||||||||||||||   ||  | |  |    | ||| | |||    |||       |||   | |  |  ||    ||||  | | ||  || |||        |  |  | |   
GCAATTTGGAGGATATACACTTGTGAGGAACTCGGGTGACCTGTTTCAAAGTTTTGGATTTGATACACAGCCAGTTCTCATTGGCCTCATCATATTTCAGgt--attgatatatcaaaataacaattatcatgagaaatggcattggtgcatggtatcaatgtactaactaacattcattttattaataagtttctgttgat--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164164362|gb|EL967774.1|EL967774
EST:     GTTTCGGATTTGATACACAGCCTGTTCTCATTGGTTTGATCATATTTCAG                         CACACTGTAATACCACTGCAACATCTAGTAAGCTTTGGCC
genomic: GTTTCGGATTTGATACACAGCCTGTTCTCATTGGTTTGATCATATTTCAGgtttgttatt ... attatcacagCACACTGTAATACCACTGCAACATCTAGTAAGCTTTGGCC
EST: gi|125273415|gb|EL287500.1|EL287500
EST:     GTTTCGGATTTGATACACAGCCTGTTCTCATTGGTTTGATCATATTTCAG                         CACACTGTAATACCAC
genomic: GTTTCGGATTTGATACACAGCCTGTTCTCATTGGTTTGATCATATTTCAGgtttgttatt ... attatcacagCACACTGTAATACCAC