Sequence
atgc intronic sequence ATGC exonic sequenceAACTCACTGCTCTCAAGCTTCCAACTCTCCCGAAAACCTTGGTTGGTGTAATTAGCCAAGAGAAGTTTGAGAAATCACGAGCATACAGTCTTGACAAAAGgtttcgtcttgatcatatttatatcattttagttttttataattgccaggggatatcatcactgagaactttaatatatgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT4G01320.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G01320.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA09G39150.1 (Glycine max), 5'ss of exon 2
AACTCACTGCTCTCAAGCTTCCAACTCTCCCGAAAACCTTGGTTGGTGTAATTAGCCAAGAGAAGTTTGAGAAATCACGAGCATACAGTCTTGACAAAAGgtttcgtcttgatcatatttatatcattttagtt--------ttttataattgccaggggatatcatcactgagaactttaatatatgcag-------------------------------------------------------
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AACATAGGGCCCTCAAACTTCCTACTCTTCCAAAGACTTTAGAAGGTGTTATCAGCCAAGAGAAATTTGAGAAATCTAGAGCCTATAGTCTTGATAAAAGgtttgttcctgaatatatgtgaatttctttcattggatgatgctatcttattctcaaggttgcttctggtatatttttttcataattgtgtatttctgttattgtatcttgttagcatttttacaaattccttttttgttgttcag
upper sequence: AT4G01320.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA18G47190.1 (Glycine max), 5'ss of exon 2
AACTCACTGCTCTCAAGCTTCCAACTCTCCCGAAAACCTTGGTTGGTGTAATTAGCCAAGAGAAGTTTGAGAAATCACGAGCATACAGTCTTGACAAAAGgtttcgtcttgatcatatttatatcattttagttttttataattgccaggg----gatatcatcactgagaactttaatatatgcag---------------------------------------------------------------
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AACATAGTGCCCTCAAACTTCCTACTCTTCCAAAGACTTTAGAAGGAGTTATCAGCCAAGAGAAATTTGAGAAATCTAGAGCCTATAGTCTTGATAAAAGgtttgttcttgaatttatgtgaatttctttcattggatgatgttatcttattctcaaggttgcttctg-gtatttctttttcttcataattgtgtatttctgttattgtatcttgttagcatttttacaaatgcctttttttttgttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86066466|gb|DR362223.1|DR362223EST: ATTAGCCAAGAGAAGTTTGAGAAATCACGAGCATACAGTCTTGACAAAAG CTATTTTCACTTTGTTCATGAGTTTGTAACTATACTTATGGACTCTGCAAT
genomic: ATTAGCCAAGAGAAGTTTGAGAAATCACGAGCATACAGTCTTGACAAAAGgtttcgtctt ... atatatgcagCTATTTTCACTTTGTTCATGAGTTTGTAACTATACTTATGGACTCTGCAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AACTCACTGCTCTCAAGCTTCCAACTCTCCCGAAAACCTTGGTTGGTGTAATTAGCCAAGAGAAGTTTGAGAAATCACGAGCATACAGTCTTGACAAAAGgtttcgtcttgatcatatttatatcattttagttttttataattgccaggggatatcatcactgagaactttaatatatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT