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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggctcaaccgacagttcaaaaacttactcacatctacatttcacttaagaaatcatgtcttatgaccctctctcaatgttttgcttgcagATCCTTGCCTTCTTACAATTTGGAGGATACACTCTTGTCAGAAACTCCACTGATCTCTTCAGGAGTTTCGGATTTGATACACAGCCTGTTCTCATTGGTT

Basic information

species Arabidopsis thaliana
transcript AT4G01320.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G01320.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: Vv15s0046g02040.t01 (Vitis vinifera), 3'ss of exon 10
gtgaggctcaaccgacagttcaaaaacttactcacatctacatttcacttaagaaatcatgtctt---atgaccctct---ctcaatgttttgctt----gcagATCCTTGCCTTCTTACAATTTGGAGGATACACTCTTGTCAGAAACTCCACTGATCTCTTCAGGAGTTTCGGATTTGATACACAGCCTGTTCTCATTGGTT
       | |    | || | | |   ||  | | ||    |  |    | |||         ||   |||    |||   ||  ||   |||| |    |||||| ||| | ||||| |||||||||||||| || ||||| || |||||   ||| || ||    ||||| ||||||||||||||||| |||||||||||  
----tttttatttaatagcttagatgattgatgagattagaacatggtcttagaggaagaactttgatatggtgttctgaacttcatacattgcatcaatgcagATTCTTACATTCTTGCAATTTGGAGGATATACACTTGTGAGGAACTCGGGTGACCTGTTTCAAAGTTTTGGATTTGATACACAGCCAGTTCTCATTGGCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125234309|gb|EL248394.1|EL248394
EST:     CACTACATACTCGTTCATTGCAGTTCAA                         ATCCTTGCCTTCTTACAATTTGGAGGATACACTCTTGTCAGAAACCTCCAC
genomic: CACTACATACTCGTTCATTGCAGTTCAAgtgaggctca ... ttgcttgcagATCCTTGCCTTCTTACAATTTGGAGGATACACTCTTGTCAGAAAC-TCCAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acatttcacttaagaaatcatgtcttatgaccctctctcaatgttttgcttgcagATCCTTGCCTTCTTACAATTTGGAGGATACACTCTTGTCAGAAACTCCACTGATCTCTTCAGGAGTTTCGGATTTGATACACAGCCTGTTCTCATTGGTT
                                           ttttgctt  CT-rich tract
         ttaagaaat  TA-rich tract