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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCACTGATTTGCCATTTTCTTTGTACTCAACTTTCGTGATCGAGTCTCGGCATGGGTTCAACAAAgtatgtcgtatttccaacactaccttgtgacttacgtttttttatcagagatgtggattaaatttgcttctaaattctgttgacag

Basic information

species Arabidopsis thaliana
transcript AT4G01320.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G01320.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA18G47190.1 (Glycine max), 5'ss of exon 5
ATCACTGATTTGCCATTTTCTTTGTACTCAACTTTCGTGATCGAGTCTCGGCATGGGTTCAACAAAgtatgtcgtatttccaacactaccttgtgacttacgtttttttatcagagatgtggattaaatttgcttctaaattctgttgacag-----------------
 | ||||||||||| |||||| ||||||||||||| ||||| ||| | || ||||| || ||||| ||  ||  | || |    | | |       | |   || ||| ||    | | |   || | |   ||| ||  ||   |||||                   
-TAACTGATTTGCCCTTTTCTCTGTACTCAACTTTTGTGATTGAGGCCCGTCATGGTTTTAACAAGGttcgtattcttccttcaaattcaaccatccatctattatttcattcatgtttttagttcactc--cttttattttgatttgacgtctcattttgtaatattg

upper sequence: AT4G01320.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv15s0046g02040.t01 (Vitis vinifera), 5'ss of exon 5
ATCACTGATTTGCCATTTTCTTTGTACTCAACTTTCGTGATCGAGTCTCGGCATGGGTTCAACAAAgtatgtcgtatttccaacactaccttgtgacttacgtttttttatcagagatgtggattaaatttgct---tctaaattctgtt-gacag----------
|| |||||||||||||||||| | ||||||||||| ||||| ||| | || ||||| ||||||||||| |||  |  |||    |   |||| | |  |  ||  |||  |      |      |  |||||     |||||    |||| | ||           
ATTACTGATTTGCCATTTTCTCTATACTCAACTTTTGTGATTGAGGCCCGCCATGGTTTCAACAAAgtttgtattcattcttctatctccttatcatatttgtgatttctttgttttttgaatctgtatttggaagatctaaggcttgtttggcaacattttttaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124753435|gb|EH843565.1|EH843565
EST:     TTCGTGATCGAGTCTCGGCATGGGTTCAACAAA                         CAAACAATATGGATGTTCATTAGGGACATGATCAAAGGAACATTCCTCTCT
genomic: TTCGTGATCGAGTCTCGGCATGGGTTCAACAAAgtatgtcgta ... ctgttgacagCAAACAATATGGATGTTCATTAGGGACATGATCAAAGGAACATTCCTCTCT