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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTCTGGAGCTGTTTTACCGAGGTTGGGCCTTGATCCAGAGAATGAAATACTGCATACTCTTTCATTCTTGGCTGGTGTTATGACATGGTCACAGgtgttccaaataaaccccttcatatagtcctatacgtttagcatcaaaatatctattttcttaagataataatatttcttttatattctgatgcag

Basic information

species Arabidopsis thaliana
transcript AT4G01320.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G01320.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA18G47190.1 (Glycine max), 5'ss of exon 4
ATGTCTGGAGCTGTTTTACCGAGGTTGGGCCTTGATCCAGAGAATGAAATACTGCATACTCTTTCATTCTTGGCTGGTGTTATGACATGGTCACAGgtgttccaaataaaccccttcatatagtcctatacgtttagcatcaaa-atatc-tattttcttaagat----aataatatttcttttatattctgatgcag
|| || |||| | || |  | |      | ||  || | |||||||||||||||||||| ||| | || || ||||| || ||||  |||||||||||||       | ||   ||  ||       |||   | |   |      |||  |   |  || |||     | |  |||||  |  || |||   | || 
ATATCAGGAGATTTTATGACAATAGCCAGTCTCAATGCTGAGAATGAAATACTGCATACCCTTGCCTTTTTAGCTGGGGTGATGATTTGGTCACAGGtgtgtttttgacactttttattactagagaatatagtaatttttgggtgtattatgcataattgagaccaccagttttatttactccatgttcaacttca-

upper sequence: AT4G01320.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv15s0046g02040.t01 (Vitis vinifera), 5'ss of exon 4
ATGTCTGGAGCTGTTTTACCGAGGTTGGGCCTTGATCCAGAGAATGAAATACTGCATACTCTTTCATTCTTGGCTGGTGTTATGACATGGTCACAGgtgttccaaataaaccccttcatatagtcctatacgtttagcatcaaaatatctattttcttaaga---taataatatttcttttatat----tctgatgcag-----
|  || ||||   || ||  |    | ||| |  || |||||||||| ||||||||||| ||| | ||||| |||||||||||||  ||||||||||||   || ||   | | |   | || ||  |    | |  |  |    | | ||||  || || |   || |    | ||| || | |    ||||||   |     
AAATCAGGAGACTTTCTAGTGGTAGTTGGCTTAAATGCAGAGAATGAGATACTGCATACCCTTGCGTTCTTAGCTGGTGTTATGATTTGGTCACAGgtg---cagat---ctcttgtgtttattctgaaggatatgac--ccgtttttttattggctgaaaaatctagtggagtgtctattgtgtggcttctgatatcgttatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86066466|gb|DR362223.1|DR362223
EST:     AAATACTGCATACTCTTTCATTCTTGGCTGGTGTTATGACATGGTCACAG                         ATCACTGATTTGCCATTTTCTTTGTACTCAACTTTCGTGATCGAGTCTCGG
genomic: AAATACTGCATACTCTTTCATTCTTGGCTGGTGTTATGACATGGTCACAGgtgttccaaa ... tctgatgcagATCACTGATTTGCCATTTTCTTTGTACTCAACTTTCGTGATCGAGTCTCGG