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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatatctggtttcggtatacagtatctcattttgaatatagagttgttacattacaattgtaaagttttcatttttaccttagATGTCTGGAGCTGTTTTACCGAGGTTGGGCCTTGATCCAGAGAATGAAATACTGCATACTCTTTCATTCTTGGCTGGTGTTATGACATGGTCACAG

Basic information

species Arabidopsis thaliana
transcript AT4G01320.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G01320.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv15s0046g02040.t01 (Vitis vinifera), 3'ss of exon 3
--------gtacatatctggttt-cggtatacagtatctcattttgaatatagagttgt-tacattacaattgtaaa-gttttcatttttaccttagATGTCTGGAGCTGTTTTACCGAGGTTGGGCCTTGATCCAGAGAATGAAATACTGCATACTCTTTCATTCTTGGCTGGTGTTATGACATGGTCACAG
         | ||| | ||| ||  | ||  ||    ||       || ||| || ||  ||||  | ||||||     ||| | || | ||   |||  || ||||   || ||  |    | ||| |  || |||||||||| ||||||||||| ||| | ||||| |||||||||||||  |||||||||
gtaagtgaatgcatttgtggattatgataggcaccccctaccccccaacatacagatgcatacaaaataattgtgcccatttgctttgtgactgcagAAATCAGGAGACTTTCTAGTGGTAGTTGGCTTAAATGCAGAGAATGAGATACTGCATACCCTTGCGTTCTTAGCTGGTGTTATGATTTGGTCACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164191449|gb|ES022910.1|ES022910
EST:     TTATGGACTCTGCAATTTTGTTCTTTGGGATCTTGCCTTGGTTTTGGAAG                         ATGTCTGGAGCTGTTTTACCGAGGTTGGGCCTTGATCCAG
genomic: TTATGGACTCTGCAATTTTGTTCTTTGGGATCTTGCCTTGGTTTTGGAAGgtacatatct ... tttaccttagATGTCTGGAGCTGTTTTACCGAGGTTGGGCCTTGATCCAG
EST: gi|86066466|gb|DR362223.1|DR362223
EST:     TTATGGACTCTGCAATTTTGTTCTTTGGGATCTTGCCTTGGTTTTGGAAG                         ATGTCTGGAGCTGTTTTACCGAGGTTGGGCCTTGATCCAGAGAATGAAATA
genomic: TTATGGACTCTGCAATTTTGTTCTTTGGGATCTTGCCTTGGTTTTGGAAGgtacatatct ... tttaccttagATGTCTGGAGCTGTTTTACCGAGGTTGGGCCTTGATCCAGAGAATGAAATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttgaatatagagttgttacattacaattgtaaagttttcatttttaccttagATGTCTGGAGCTGTTTTACCGAGGTTGGGCCTTGATCCAGAGAATGAAATACTGCATACTCTTTCATTCTTGGCTGGTGTTATGACATGGTCACAG
                                     ttttcatttttacctt  CT-rich tract
                      attacaattgtaaagt  TA-rich tract