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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACACTGTAATACCACTGCAACATCTAGTAAGCTTTGGCCTGAACCTCGTTAGTCGAGCGTTTGAGTTTCAGgtaccatcttacaatccctcaagatccaaccatagtttctttattgcaatggcagcctcatctactaatctgagttaacgttccttttgcag

Basic information

species Arabidopsis thaliana
transcript AT4G01320.1
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125187462|gb|EL202416.1|EL202416
EST:     AACCTCGTTAGTCGAGCGTTTGAGTTTCAG                         GCTGATGCTTTTGCTGTGAAGCTTGGCTATGCAAAAGATCTTCGTCCTGCT
genomic: AACCTCGTTAGTCGAGCGTTTGAGTTTCAGgtaccatctt ... ccttttgcagGCTGATGCTTTTGCTGTGAAGCTTGGCTATGCAAAAGATCTTCGTCCTGCT
EST: gi|125085685|gb|EL145428.1|EL145428
EST:     TAAGCTTTGGCCTGAACCTCGTTAGTCGAGCGTTTGAGTTTCAG                         GCTGATGCTTTTGCTGTGAAGCTTGGCTATGCAAAAGATCTTCGTCCTGCT
genomic: TAAGCTTTGGCCTGAACCTCGTTAGTCGAGCGTTTGAGTTTCAGgtaccatctt ... ccttttgcagGCTGATGCTTTTGCTGTGAAGCTTGGCTATGCAAAAGATCTTCGTCCTGCT