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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATGGCCGAATATATTGCTTACAAGTGGACAGGGAGGCAATGCTACTGCATCTATACAGGTTCTACCGTGATGCAGTCGTCCAACAAgttagtttacttttccttagttcctgatatctggttattcagatgccatttaggcaagtctactatatgttcaataaagatcatgtgtgcatttagatca...

Basic information

species Arabidopsis thaliana
transcript AT3G12010.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125247877|gb|EL261962.1|EL261962
EST:     AGGTTACTACCGTGATGCAGTCGTCCAACAA                         GGTTCTTTACCAATATACTCAAGCAAAGTTGTCGGTGAATGTGGTCGACAA
genomic: AGGTT-CTACCGTGATGCAGTCGTCCAACAAgttagtttac ... ttatttacagGGTTCTTTACCAATATACTCAAGCAA-GTTGTCGGTGAATGTGGTCGACAA
EST: gi|86073259|gb|DR369016.1|DR369016
EST:     CAATGCTACTGCATCTATACAGGTTCTACCGTGATGCAGTCGTCCAACAA                         GGTTCTTTACCAATATACTCAAGCAAGTTGTCGGTGAATGTGGTCGACAAT
genomic: CAATGCTACTGCATCTATACAGGTTCTACCGTGATGCAGTCGTCCAACAAgttagtttac ... ttatttacagGGTTCTTTACCAATATACTCAAGCAAGTTGTCGGTGAATGTGGTCGACAAT