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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttgtaggtgtttttttttcacagtacttggacatagatttggtaaatctactgtttctataatgttttgaactaaaacacttccacttttccttttagCTTTAGCAATGCAGGCATGAAAGAAAAGAATTCCACTACCGCCTCTACACTTGGACGGATTTTAGCTACTTGTTCTAAACAG

Basic information

species Arabidopsis thaliana
transcript AT3G12010.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86064558|gb|DR360315.1|DR360315
EST:     TAGCAACTCCATCACTGTATTTATATTCATCTCCATCTGGGTTTTCGAAG                         CTTTAGCAATGCAGGCATGAAAGAAAAGAATTCCACTACCGCCTCTACACT
genomic: TAGCAACTCCATCACTGTATTTATATTCATCTCCATCTGGGTTTTCGAAGgtaacacttc ... ttccttttagCTTTAGCAATGCAGGCATGAAAGAAAAGAATTCCACTACCGCCTCTACACT
EST: gi|86064559|gb|DR360316.1|DR360316
EST:     TAGCAACTCCATCACTGTATTTATATTCATCTCCATCTGGGTTTTCGAAG                         CTTTAGCAATGCAGGCATGAAAGAAAAGAATTCCACTACCGCCTCTACACT
genomic: TAGCAACTCCATCACTGTATTTATATTCATCTCCATCTGGGTTTTCGAAGgtaacacttc ... ttccttttagCTTTAGCAATGCAGGCATGAAAGAAAAGAATTCCACTACCGCCTCTACACT
EST: gi|86064560|gb|DR360317.1|DR360317
EST:     TAGCAACTCCATCACTGTATTTATATTCATCTCCATCTGGGTTTTCGAAG                         CTTTAGCAATGCAGGCATGAAAGAAAAGAATTCCACTACCGCCTCTACACT
genomic: TAGCAACTCCATCACTGTATTTATATTCATCTCCATCTGGGTTTTCGAAGgtaacacttc ... ttccttttagCTTTAGCAATGCAGGCATGAAAGAAAAGAATTCCACTACCGCCTCTACACT
EST: gi|86064557|gb|DR360314.1|DR360314
EST:     TAGCAACTCCATCACTGTATTTATATTCATCTCCATCTGGGTTTTCGAAG                         CTTTAGCAATGCAGGCATGAAAGAAAAGAATTCCACTACCGCCTCTACACT
genomic: TAGCAACTCCATCACTGTATTTATATTCATCTCCATCTGGGTTTTCGAAGgtaacacttc ... ttccttttagCTTTAGCAATGCAGGCATGAAAGAAAAGAATTCCACTACCGCCTCTACACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatctactgtttctataatgttttgaactaaaacacttccacttttccttttagCTTTAGCAATGCAGGCATGAAAGAAAAGAATTCCACTACCGCCTCTACACTTGGACGGATTTTAGCTACTTGTTCTAAACAG
                          aactaaa  putative branch site (score: 2)
                                  cacttccacttttcct  CT-rich tract
          tttctataatgtttt  TA-rich tract