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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcctttcttttttattttcaaatctttgtgaaacatttctgagttagtctgtggttttttataaaaactttaattgactcagtcccatcataaagtgggacatccatttcataacatttcattttggactaaagtttggttcctttgaaatttgggaaactgaaatgtatgaatatgtctagcagGAATTCAAGTGCACAGGCAGGTGTTGGTTCTGGTGCTTTATCACATGTCTATATACATCATCCATCCCTACGTTGCAATATTCCTGAATCCAATGGGTTA

Basic information

species Arabidopsis thaliana
transcript AT3G12010.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86064559|gb|DR360316.1|DR360316
EST:     TTCTCCTTTTCGTTAGAGGCATTTATCAGCACTGCTTGAAGTTTTAACAT                         GAATTCAAGTGCACAGGCAGGTGTTGGTTCTGGTGCTTTATCACATGT
genomic: TTCTCCTTTTCGTTAGAGGCATTTATCAGCACTGCTTGAAGTTTTAACATgtacgccttt ... tgtctagcagGAATTCAAGTGCACAGGCAGGTGTTGGTTCTGGTGCTTTATCACATGT
EST: gi|86064560|gb|DR360317.1|DR360317
EST:     TTCTCCTTTTCGTTAGAGGCATTTATCAGCACTGCTTGAAGTTTTAACAT                         GAATTCAAGTGCACAGGCAGGTGTTGGTTCTGGTGCTTTATCACATGTCTA
genomic: TTCTCCTTTTCGTTAGAGGCATTTATCAGCACTGCTTGAAGTTTTAACATgtacgccttt ... tgtctagcagGAATTCAAGTGCACAGGCAGGTGTTGGTTCTGGTGCTTTATCACATGTCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaagtttggttcctttgaaatttgggaaactgaaatgtatgaatatgtctagcagGAATTCAAGTGCACAGGCAGGTGTTGGTTCTGGTGCTTTATCACATGTCTATATACATCATCCATCCCTACGTTGCAATATTCCTGAATCCAATGGGTTA
 gactaaa  putative branch site (score: 2)
                                aaatgtatgaatat  TA-rich tract