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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatattgaactatattgttagagtcttgtcttgatcattttatcctcatctttgtagactaatctgttctattatcatgtttttttttcttatagATCCGAGGAAAGGCTTGAATCACAATTATATTCTCCTTTTCGTTAGAGGCATTTATCAGCACTGCTTGAAGTTTTAACAT

Basic information

species Arabidopsis thaliana
transcript AT3G12010.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86064558|gb|DR360315.1|DR360315
EST:     ATATATGTTTGAAAGAGTTTCTTGCGCTGAAGAGTTGTATGCAGCATACG                         ATCCGAGGAAAGGCTTGAATCACAATTATATTCTCATTTTCG
genomic: ATATATGTTTGAAAGAGTTTCTTGCGCTGAAGAGTTGTATGCAGCATACGgtatattgaa ... tttcttatagATCCGAGGAAAGGCTTGAATCACAATTATATTCTCCTTTTCG
EST: gi|86064559|gb|DR360316.1|DR360316
EST:     ATATATGTTTGAAAGAGTTTCTTGCGCTGAAGAGTTGTATGCAGCATACG                         ATCCGAGGAAAGGCTTGAATCACAATTATATTCTCCTTTTCGTTAGAGGCA
genomic: ATATATGTTTGAAAGAGTTTCTTGCGCTGAAGAGTTGTATGCAGCATACGgtatattgaa ... tttcttatagATCCGAGGAAAGGCTTGAATCACAATTATATTCTCCTTTTCGTTAGAGGCA
EST: gi|86064560|gb|DR360317.1|DR360317
EST:     ATATATGTTTGAAAGAGTTTCTTGCGCTGAAGAGTTGTATGCAGCATACG                         ATCCGAGGAAAGGCTTGAATCACAATTATATTCTCCTTTTCGTTAGAGGCA
genomic: ATATATGTTTGAAAGAGTTTCTTGCGCTGAAGAGTTGTATGCAGCATACGgtatattgaa ... tttcttatagATCCGAGGAAAGGCTTGAATCACAATTATATTCTCCTTTTCGTTAGAGGCA
EST: gi|86064557|gb|DR360314.1|DR360314
EST:     ATATATGTTTGAAAGAGNTTCTTGCGCTGAAGAGTTGTATGCANCATACG                         ATCCGAGGAAAGGCTTGAATCACAATTATATTCTCCTTTTC
genomic: ATATATGTTTGAAAGAGTTTCTTGCGCTGAAGAGTTGTATGCAGCATACGgtatattgaa ... tttcttatagATCCGAGGAAAGGCTTGAATCACAATTATATTCTCCTTTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatcctcatctttgtagactaatctgttctattatcatgtttttttttcttatagATCCGAGGAAAGGCTTGAATCACAATTATATTCTCCTTTTCGTTAGAGGCATTTATCAGCACTGCTTGAAGTTTTAACAT
                gactaat  putative branch site (score: 2)
                                  tcatgtttttttttct  putative PPT
                          ttctattatcatgttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatattgaactatattgttagagtcttgtcttgatcattttatcctcatctttgtagactaatctgttctattatcatgtttttttttcttatagATCCGAGGAAAGGCTTGAATCACAATTATATTCTCCTTTTCGTTAGAGGCATTTATCAGCACTGCTTGAAGTTTTAACAT

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