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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaactaactttttcttccgtctgtttgtgtttccagagactaaagaaacttggtttttgctttagatctagtctcagtttaccaattctgcagtttcttactttgatcctttgttgcagTATAAGTGCAGAAAAACTCAAAGTGGATTTGAACATCTATGTGATGACCATCAAACTTTTAGCTTACAGTAAGCGATTTGCAGAACTGTCGCTATTCACC

Basic information

species Arabidopsis thaliana
transcript AT3G12010.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125197068|gb|EL212022.1|EL212022
EST:     GTTGAGGAATCAGAGTACCTAGTTGCTATCATCACCGAGTTCCTTCGCAG                         TATAAGTGCAGAAAAACTCA
genomic: GTTGAGGAATCAGAGTACCTAGTTGCTATCATCACCGAGTTCCTTCGCAGgtaaactaac ... tttgttgcagTATAAGTGCAGAAAAACTCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatctagtctcagtttaccaattctgcagtttcttactttgatcctttgttgcagTATAAGTGCAGAAAAACTCAAAGTGGATTTGAACATCTATGTGATGACCATCAAACTTTTAGCTTACAGTAAGCGATTTGCAGAACTGTCGCTATTCACC
                                          tcctttgtt  CT-rich tract
                             tttctta  TA-rich tract