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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAAAACTCAAAGTGGATTTGAACATCTATGTGATGACCATCAAACTTTTAGCTTACAGTAAGCGATTTGCAGAACTGTCGCTATTCACCACAAACAAGgtttgttattcttctttatctgtgaagacaaaacctcctctaaggtttcttgttcttagagtttaggctacatttatgtgcag

Basic information

species Arabidopsis thaliana
transcript AT3G12010.1
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125319655|gb|EL333740.1|EL333740
EST:     AGCTTACAGTAAGCGATTTGCAGAACTTGTCGCTATTCACCACAAACAAG                         ATAATCGAACCATCAAAGGAAGTCGCGTTCCAACTTCTGGATAAGTGGTCG
genomic: AGCTTACAGTAAGCGATTTGCAGAAC-TGTCGCTATTCACCACAAACAAGgtttgttatt ... ttatgtgcagATAATCGAACCATCAAAGGAAGTCGCGTTCCAACTTCTGGATA-GTGGTCG
EST: gi|125238898|gb|EL252983.1|EL252983
EST:     TAAGCGATTTGCAGAACTGTCGCTATTCACCACAAACAAG                         ATAATCGAACCATCAAAGGAAGTCGCGTTCCAACTTCTGGATAGTGGTCGT
genomic: TAAGCGATTTGCAGAACTGTCGCTATTCACCACAAACAAGgtttgttatt ... ttatgtgcagATAATCGAACCATCAAAGGAAGTCGCGTTCCAACTTCTGGATAGTGGTCGT
EST: gi|86087632|gb|DR383391.1|DR383391
EST:     TAGCTTACAGTAAGCGATTTGCAGAACTGTCGCTATTCACCACAAACAAG                         ATAATCGAACCATCAAAGGAAGTCGCGTTCCAACTTCTGGATAGTGGTCGT
genomic: TAGCTTACAGTAAGCGATTTGCAGAACTGTCGCTATTCACCACAAACAAGgtttgttatt ... ttatgtgcagATAATCGAACCATCAAAGGAAGTCGCGTTCCAACTTCTGGATAGTGGTCGT