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gttagtctatatttgttattctgtttgacttatttgttagtgggaacactctttataaaagatagaaaacgaatgtaaatgcatatgagaaatctatgacgattagtaaacgactataaccttttcagGTTGGTATATCTTCTGGAGCTGCTGCTGCTGCTGCAATCCAGGTTGCAAAGAGACCTGAAAATGCCGGGAAACTCATAGCC
species | Arabidopsis thaliana |
transcript | AT2G43750.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGGAAGCTATTGAAACCTCGAAGCAACTAGCTCTCCAGGAAGGCTTGTTG GTTGGTATATCTTEST: gi|125098400|gb|EL154559.1|EL154559
genomic: AGGAAGCTATTGAAACCTCGAAGCAACTAGCTCTCCAGGAAGGCTTGTTGgttagtctat ... accttttcagGTTGGTATATCTT
EST: AGGAAGCTATTGAAACCTCGAAGCAACTAGCTCTCCAGGAAGGCTTGTTG GTTGGTATATCTTCTGGAGCTGCTG
genomic: AGGAAGCTATTGAAACCTCGAAGCAACTAGCTCTCCAGGAAGGCTTGTTGgttagtctat ... accttttcagGTTGGTATATCTTCTGGAGCTGCTG
tgtaaatgcatatgagaaatctatgacgattagtaaacgactataaccttttcagGTTGGTATATCTTCTGGAGCTGCTGCTGCTGCTGCAATCCAGGTTGCAAAGAGACCTGAAAATGCCGGGAAACTCATAGCC
ctataac putative branch site (score: 3)
ccttttc CT-rich tract
attagtaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtctatatttgttattctgtttgacttatttgttagtgggaacactctttataaaagatagaaaacgaatgtaaatgcatatgagaaatctatgacgattagtaaacgactataaccttttcagGTTGGTATATCTTCTGGAGCTGCTGCTGCTGCTGCAATCCAGGTTGCAAAGAGACCTGAAAATGCCGGGAAACTCATAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA