1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TACAAGAGGCAAAATCGATATATTGGTTGCGGGGATTGGAACTGGTGGAACTATCACTGGTGTTGGTCGATTCATTAAAGAAAGAAAACCTGAATTGAAGgtacatagcaagagggcttgtagcatatcagctggaatcaactgtagatgttataacctccgtaattagatttagttgatgtttacttgtacttgtagttatatttaattagttgatgtttacttgtaccag
species | Arabidopsis thaliana |
transcript | AT2G43750.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CACTGGTGTTGGTCGATTCATTAAAGAAAGAAAACCTGAATTGAAG GTTATTGGTGTCGAACCCACGGAAAGTGCTATACTTTCTGGTGGAAA-CCCEST: gi|125140809|gb|EL178822.1|EL178822
genomic: CACTGGTGTTGGTCGATTCATTAAAGAAAGAAAACCTGAATTGAAGgtacatagca ... cttgtaccagGTTATTGGTGTCGAACCCACGGAAAGTGCTATACTTTCTGGTGGAAAACCC
EST: ATCACTGGTGTTGGTCGATTCATTAAAGAAAGAAAACCTGAATTGAAG GTTATTGGTGTCGAACCCACGGAAAGTGCTATACTTTCTGGTGGAAAACCCEST: gi|124705051|gb|EH796453.1|EH796453
genomic: ATCACTGGTGTTGGTCGATTCATTAAAGAAAGAAAACCTGAATTGAAGgtacatagca ... cttgtaccagGTTATTGGTGTCGAACCCACGGAAAGTGCTATACTTTCTGGTGGAAAACCC
EST: CTATCACTGGTGTTGGTCGATTCATTAAAGAAAGAAAACCTGAATTGAAG GTTATTGGTGTCGAACCCACGGAAAGTGCTATACTTTCTGGTGGAAAACCCEST: gi|125273257|gb|EL287342.1|EL287342
genomic: CTATCACTGGTGTTGGTCGATTCATTAAAGAAAGAAAACCTGAATTGAAGgtacatagca ... cttgtaccagGTTATTGGTGTCGAACCCACGGAAAGTGCTATACTTTCTGGTGGAAAACCC
EST: CTATCACTGGTGTTGGTCGATTCATTAAAGAAAGAAAACCTGAATTGAAG GTTATTGGTGTCGAACCCACGGAAAGTGCTATACTTTEST: gi|125082735|gb|EL143541.1|EL143541
genomic: CTATCACTGGTGTTGGTCGATTCATTAAAGAAAGAAAACCTGAATTGAAGgtacatagca ... cttgtaccagGTTATTGGTGTCGAACCCACGGAAAGTGCTATACTTT
EST: CTATCACTGGTGTTGGTCGATTCATTAAAGAAAGAAAACCTGAATTGAAG GTTATTGGTGTCGAACCCACGGAAAGTGCTATACCTTCTGGTGGAAAACCCEST: gi|124985277|gb|EL057877.1|EL057877
genomic: CTATCACTGGTGTTGGTCGATTCATTAAAGAAAGAAAACCTGAATTGAAGgtacatagca ... cttgtaccagGTTATTGGTGTCGAACCCACGGAAAGTGCTATACTTTCTGGTGGAAAACCC
EST: CTATCACTGGTGTTGGTCGATTCATTAAAGAAAGAAAACCTGAATTGAAG GTTATTGGTGTC
genomic: CTATCACTGGTGTTGGTCGATTCATTAAAGAAAGAAAACCTGAATTGAAGgtacatagca ... cttgtaccagGTTATTGGTGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACAAGAGGCAAAATCGATATATTGGTTGCGGGGATTGGAACTGGTGGAACTATCACTGGTGTTGGTCGATTCATTAAAGAAAGAAAACCTGAATTGAAGgtacatagcaagagggcttgtagcatatcagctggaatcaactgtagatgttataacctccgtaattagatttagttgatgtttacttgtacttgtagttatatttaattagttgatgtttacttgtaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG