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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGTATATCTTCTGGAGCTGCTGCTGCTGCTGCAATCCAGGTTGCAAAGAGACCTGAAAATGCCGGGAAACTCATAGCCgtaagtcctcaatgttcttcatcataatttctttatggaccaaaacctagtcttgtatctgtgaccaaccactgaatgatatagaaaaagagttcttaag...

Basic information

species Arabidopsis thaliana
transcript AT2G43750.2
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164007805|gb|ES108003.1|ES108003
EST:     ATGCCGGGAAACTCATAGCC                         GTTGTGTTCCCGAGCTTCGGGGAACGTTACCTCTCGACCCAGCTTTTCCAG
genomic: ATGCCGGGAAACTCATAGCCgtaagtcctc ... tggttttcagGTTGTGTTCCCGAGCTTCGGGGAACGTTACCTCTCGACCCAGCTTTTCCAG
EST: gi|125197662|gb|EL212616.1|EL212616
EST:     AATCCAGGTTGCAAAGAGACCTGAAAATGCCGGGAAACTCATAGCC                         GTTGTGTTCCCGAGCTTCGGGGAACGTTACCTCTCGACCCAG
genomic: AATCCAGGTTGCAAAGAGACCTGAAAATGCCGGGAAACTCATAGCCgtaagtcctc ... tggttttcagGTTGTGTTCCCGAGCTTCGGGGAACGTTACCTCTCGACCCAG
EST: gi|125313806|gb|EL327891.1|EL327891
EST:     AAAGAGACCTGAAAATGCCGGGAAACTCATAGCC                         GTTGTGTTCCCGAGCTTC-GGGAACGTTACCTCTCGACCCAGCTTTTCCAG
genomic: AAAGAGACCTGAAAATGCCGGGAAACTCATAGCCgtaagtcctc ... tggttttcagGTTGTGTTCCCGAGCTTCGGGGAACGTTACCTCTCGACCCAGCTTTTCCAG
EST: gi|124737938|gb|EH829340.1|EH829340
EST:     AAAATGCCGGGAAACTCATAGCC                         GTTAGTGTTCCCGAGCTTCGGGGAACGTTACCTCTCGACCCAGCTTTTCCA
genomic: AAAATGCCGGGAAACTCATAGCCgtaagtcctc ... tggttttcagGTT-GTGTTCCCGAGCTTCGGGGAACGTTACCTCTCGACCCAGCTTTTCCA
EST: gi|124892857|gb|EH971759.1|EH971759
EST:     GAAAATGCCGGGAAACTCATAGCC                         GTTGTGTTCCCGAGCTTCGGGGAACGTTACCTCTCGACCCAGCTTTTCCAG
genomic: GAAAATGCCGGGAAACTCATAGCCgtaagtcctc ... tggttttcagGTTGTGTTCCCGAGCTTCGGGGAACGTTACCTCTCGACCCAGCTTTTCCAG
EST: gi|125230447|gb|EL244532.1|EL244532
EST:     CTGCAATCCAGGTTGCAAAGAGACCTGAAAATGCCGGGAAACTCATAGCC                         GTTGTGTTCCCGAGCTTCGGGG
genomic: CTGCAATCCAGGTTGCAAAGAGACCTGAAAATGCCGGGAAACTCATAGCCgtaagtcctc ... tggttttcagGTTGTGTTCCCGAGCTTCGGGG
EST: gi|125015709|gb|EL087978.1|EL087978
EST:     AAATGCCGGGAAACTCATAGCC                         GTTGTGTTCCCGAGCTTCGGGGAACGTTACCTCTCGACCCAGCTTTTCCAG
genomic: AAATGCCGGGAAACTCATAGCCgtaagtcctc ... tggttttcagGTTGTGTTCCCGAGCTTCGGGGAACGTTACCTCTCGACCCAGCTTTTCCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTGGTATATCTTCTGGAGCTGCTGCTGCTGCTGCAATCCAGGTTGCAAAGAGACCTGAAAATGCCGGGAAACTCATAGCCgtaagtcctcaatgttcttcatcataatttctttatggaccaaaacctagtcttgtatctgtgaccaaccactgaatgatatagaaaaagagttcttaag

- - - - - - - - - - - - - - - - - - - - - -  GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - AAGAGA