1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTTATTGGTGTCGAACCCACGGAAAGTGCTATACTTTCTGGTGGAAAACCCGgtaaggcagtgattttgtttttcttgtttctctggcacgttattctttttatcttgcgtttatttgacatgtatttgaaatgcag
species | Arabidopsis thaliana |
transcript | AT2G43750.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TATTGGTGTCGAACCCACGGAAAGTGCTATACTTTCTGGTGGAAA-CCCG GACCTCACAAGATTCAAGGAATTGGAEST: gi|125140809|gb|EL178822.1|EL178822
genomic: TATTGGTGTCGAACCCACGGAAAGTGCTATACTTTCTGGTGGAAAACCCGgtaaggcagt ... tgaaatgcagGACCTCACAAGATTCAAGGAATTGGA
EST: TATTGGTGTCGAACCCACGGAAAGTGCTATACTTTCTGGTGGAAAACCCG GACCTCACAAGATTCAAGGAAEST: gi|125264098|gb|EL278183.1|EL278183
genomic: TATTGGTGTCGAACCCACGGAAAGTGCTATACTTTCTGGTGGAAAACCCGgtaaggcagt ... tgaaatgcagGACCTCACAAGATTCAAGGAA
EST: TATTGGTGTCGAACCCACGGAAAGTGCTATACTTTCTGGTGGAAAACCCG GACCTCACAAGATTCAAGGAATTGGAGCTGGATTTGTACCCAAGAATTTGG
genomic: TATTGGTGTCGAACCCACGGAAAGTGCTATACTTTCTGGTGGAAAACCCGgtaaggcagt ... tgaaatgcagGACCTCACAAGATTCAAGGAATTGGAGCTGGATTTGTACCCAAGAATTTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTATTGGTGTCGAACCCACGGAAAGTGCTATACTTTCTGGTGGAAAACCCGgtaaggcagtgattttgtttttcttgtttctctggcacgttattctttttatcttgcgtttatttgacatgtatttgaaatgcag
- - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - GGTGGA