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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggcagtgattttgtttttcttgtttctctggcacgttattctttttatcttgcgtttatttgacatgtatttgaaatgcagGACCTCACAAGATTCAAGGAATTGGAGCTGGATTTGTACCCAAGAATTTGGATCTGGCTATTGTAGATGAATACATAGCG

Basic information

species Arabidopsis thaliana
transcript AT2G43750.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164027961|gb|ES179595.1|ES179595
EST:     TATTGGTGTCGAACCCACGGAAAGTGCTATACTTTCTGGTGGAAA-CCCG                         GACCTCACAAGATTCAAGGAATTGGA
genomic: TATTGGTGTCGAACCCACGGAAAGTGCTATACTTTCTGGTGGAAAACCCGgtaaggcagt ... tgaaatgcagGACCTCACAAGATTCAAGGAATTGGA
EST: gi|125140809|gb|EL178822.1|EL178822
EST:     TATTGGTGTCGAACCCACGGAAAGTGCTATACTTTCTGGTGGAAAACCCG                         GACCTCACAAGATTCAAGGAA
genomic: TATTGGTGTCGAACCCACGGAAAGTGCTATACTTTCTGGTGGAAAACCCGgtaaggcagt ... tgaaatgcagGACCTCACAAGATTCAAGGAA
EST: gi|125264098|gb|EL278183.1|EL278183
EST:     TATTGGTGTCGAACCCACGGAAAGTGCTATACTTTCTGGTGGAAAACCCG                         GACCTCACAAGATTCAAGGAATTGGAGCTGGATTTGTACCCAAGAATTTGG
genomic: TATTGGTGTCGAACCCACGGAAAGTGCTATACTTTCTGGTGGAAAACCCGgtaaggcagt ... tgaaatgcagGACCTCACAAGATTCAAGGAATTGGAGCTGGATTTGTACCCAAGAATTTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctggcacgttattctttttatcttgcgtttatttgacatgtatttgaaatgcagGACCTCACAAGATTCAAGGAATTGGAGCTGGATTTGTACCCAAGAATTTGGATCTGGCTATTGTAGATGAATACATAGCG
                               atttgac  putative branch site (score: 4)
         ttattctttttatctt  TA-rich tract