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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCTCACAAGATTCAAGGAATTGGAGCTGGATTTGTACCCAAGAATTTGGATCTGGCTATTGTAGATGAATACATAGCGgtatgatctgttggtttggttctctataactatacattcatctttttcactttcagcaagcaacaattttcctttttaacttcacctgttttgttgcttcttatcag

Basic information

species Arabidopsis thaliana
transcript AT2G43750.2
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125133916|gb|EL175127.1|EL175127
EST:     TATTGTAGATGAATACATAGCG                         ATTTTCCAGTGAGGAAGCTATTGAAACCTCGAAGCAACTAGCTCTCCAGGA
genomic: TATTGTAGATGAATACATAGCGgtatgatctg ... ttcttatcagA-TTTCCAGTGAGGAAGCTATTGAAACCTCGAAGCAACTAGCTCTCCAGGA
EST: gi|164076220|gb|ES212007.1|ES212007
EST:     TTTGGATCTGGCTATTGTAGATGAATTACTATAGCG                         ATTTCCAGTGAGGAAGCTATTGAAACCTCGAAGCAACTAGCTCTCCAGGA
genomic: TTTGGATCTGGCTATTGTAGATGAA-TAC-ATAGCGgtatgatctg ... ttcttatcagATTTCCAGTGAGGAAGCTATTGAAACCTCGAAGCAACTAGCTCTCCAGGA
EST: gi|124985995|gb|EL058545.1|EL058545
EST:     CCCAAGAATTTGGATCTGGCTATTGTAGATGAATACATAGCG                         ATTTCCAGTGAGGAAGCTATTGAAACCTCGAAGCAACTAGCTCTCCAGGAA
genomic: CCCAAGAATTTGGATCTGGCTATTGTAGATGAATACATAGCGgtatgatctg ... ttcttatcagATTTCCAGTGAGGAAGCTATTGAAACCTCGAAGCAACTAGCTCTCCAGGAA
EST: gi|124953988|gb|EL029124.1|EL029124
EST:     ATCTGGCTATTGTAGATGAATACATAGCG                         ATTTCCAGTGAGGAAGCTATTGAAACCTCGAAGCAACTAGCTCTCCAGGAA
genomic: ATCTGGCTATTGTAGATGAATACATAGCGgtatgatctg ... ttcttatcagATTTCCAGTGAGGAAGCTATTGAAACCTCGAAGCAACTAGCTCTCCAGGAA
EST: gi|124916306|gb|EH990180.1|EH990180
EST:     ATTTGTACCCAAGAATTTTGGATCTGGCTATTGTAGATGAATACATAGCG                         ATTTCCAGTGAGGAAGCTATTGAAACCTCGAAGCAA
genomic: ATTTGTACCCAAGAA-TTTGGATCTGGCTATTGTAGATGAATACATAGCGgtatgatctg ... ttcttatcagATTTCCAGTGAGGAAGCTATTGAAACCTCGAAGCAA
EST: gi|125173896|gb|EL195142.1|EL195142
EST:     AATTTGGATCTGGCTATTGTAGATGAATACATAGCG                         ATTTCCAGTGAGGAAGCTATTGAAACCTCGAAGACAACTAGCTCTCCAGGA
genomic: AATTTGGATCTGGCTATTGTAGATGAATACATAGCGgtatgatctg ... ttcttatcagATTTCCAGTGAGGAAGCTATTGAAACCTCGAAG-CAACTAGCTCTCCAGGA
EST: gi|164066675|gb|ES203846.1|ES203846
EST:     TTTGGATCTGGCTATTGTAGATGAATACATAGCG                         ATTTCCAGTGAGGAAGCTATTGAAACCTCGAAGCAACTAGCTCTCCAGGAA
genomic: TTTGGATCTGGCTATTGTAGATGAATACATAGCGgtatgatctg ... ttcttatcagATTTCCAGTGAGGAAGCTATTGAAACCTCGAAGCAACTAGCTCTCCAGGAA