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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCAAGAGACAGAGCCGGAGTGATGTTGTGTGCAAGGCTGTATCTATCAAGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAGgttagattgtgtttcgtttgcatttggatagagacagaggaaatctaaattggtgatcaattttgtcaatttaggggaagatataaactaactgagtattattagtcttgtaaatttgacttctttgaattttgatttcgtttctaatttttttatattctttctgaatgttatgaattgattcag

Basic information

species Arabidopsis thaliana
transcript AT2G43750.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116392152|gb|EG434744.1|EG434744
EST:     AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAG                         CTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
genomic: AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAGgttagattgt ... attgattcagCTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
EST: gi|86040114|gb|DR335869.1|DR335869
EST:     AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAG                         CTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
genomic: AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAGgttagattgt ... attgattcagCTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
EST: gi|86040132|gb|DR335887.1|DR335887
EST:     AGCCAGAAGCTGGTGNTGAAGGGCTCAATATCGCCGATAACGCCGCTCAG                         CTTATTGGGAAAACTCCGATGGTGTACTTGAACAATG
genomic: AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAGgttagattgt ... attgattcagCTTATTGGGAAAACTCCGATGGTGTACTTGAACAATG
EST: gi|86040118|gb|DR335873.1|DR335873
EST:     AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAG                         CTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
genomic: AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAGgttagattgt ... attgattcagCTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
EST: gi|86040140|gb|DR335895.1|DR335895
EST:     AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAG                         CTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
genomic: AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAGgttagattgt ... attgattcagCTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
EST: gi|86040146|gb|DR335901.1|DR335901
EST:     AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAG                         CTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
genomic: AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAGgttagattgt ... attgattcagCTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
EST: gi|86040117|gb|DR335872.1|DR335872
EST:     AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAG                         CTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
genomic: AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAGgttagattgt ... attgattcagCTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
EST: gi|86040136|gb|DR335891.1|DR335891
EST:     AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAG                         CTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
genomic: AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAGgttagattgt ... attgattcagCTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
EST: gi|86040134|gb|DR335889.1|DR335889
EST:     AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAG                         CTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
genomic: AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAGgttagattgt ... attgattcagCTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
EST: gi|86040127|gb|DR335882.1|DR335882
EST:     AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAG                         CTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
genomic: AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAGgttagattgt ... attgattcagCTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
EST: gi|86040112|gb|DR335867.1|DR335867
EST:     AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAG                         CTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
genomic: AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAGgttagattgt ... attgattcagCTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
EST: gi|125324096|gb|EL338176.1|EL338176
EST:     GGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAG                         CTTATTGGGAAAACTCCGATGGTGTACCTGAACAATGTAGTCAAGGGCTGT
genomic: GGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAGgttagattgt ... attgattcagCTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
EST: gi|125287996|gb|EL302081.1|EL302081
EST:     CTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAG                         CTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
genomic: CTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAGgttagattgt ... attgattcagCTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
EST: gi|86040141|gb|DR335896.1|DR335896
EST:     AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAG                         CTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
genomic: AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAGgttagattgt ... attgattcagCTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
EST: gi|86040122|gb|DR335877.1|DR335877
EST:     AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAG                         CTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
genomic: AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAGgttagattgt ... attgattcagCTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
EST: gi|86040129|gb|DR335884.1|DR335884
EST:     AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAG                         CTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
genomic: AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAGgttagattgt ... attgattcagCTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
EST: gi|86040133|gb|DR335888.1|DR335888
EST:     AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAG                         CTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
genomic: AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAGgttagattgt ... attgattcagCTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
EST: gi|86040115|gb|DR335870.1|DR335870
EST:     AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAG                         CTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
genomic: AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAGgttagattgt ... attgattcagCTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
EST: gi|86040125|gb|DR335880.1|DR335880
EST:     AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAG                         CTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
genomic: AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAGgttagattgt ... attgattcagCTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
EST: gi|124900624|gb|EH975242.1|EH975242
EST:     AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAG                         CTTATTGGGAAAACTCCGATGGTGTA
genomic: AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAGgttagattgt ... attgattcagCTTATTGGGAAAACTCCGATGGTGTA
EST: gi|86040120|gb|DR335875.1|DR335875
EST:     AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAG                         CTTATTGTGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
genomic: AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAGgttagattgt ... attgattcagCTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
EST: gi|125187214|gb|EL202168.1|EL202168
EST:     CCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAG                         CTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
genomic: CCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAGgttagattgt ... attgattcagCTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
EST: gi|86040124|gb|DR335879.1|DR335879
EST:     AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAG                         CTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
genomic: AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAGgttagattgt ... attgattcagCTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
EST: gi|125130899|gb|EL173840.1|EL173840
EST:     AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAG                         CTTATTGGGAAAACT
genomic: AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAGgttagattgt ... attgattcagCTTATTGGGAAAACT
EST: gi|86040126|gb|DR335881.1|DR335881
EST:     AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAG                         CTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
genomic: AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAGgttagattgt ... attgattcagCTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
EST: gi|86040137|gb|DR335892.1|DR335892
EST:     AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAG                         CTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
genomic: AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAGgttagattgt ... attgattcagCTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
EST: gi|86040128|gb|DR335883.1|DR335883
EST:     AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAG                         CTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
genomic: AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAGgttagattgt ... attgattcagCTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
EST: gi|86040121|gb|DR335876.1|DR335876
EST:     AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAG                         CTTATTG--AAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
genomic: AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAGgttagattgt ... attgattcagCTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
EST: gi|86040123|gb|DR335878.1|DR335878
EST:     AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAG                         CTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
genomic: AGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAGgttagattgt ... attgattcagCTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGT
EST: gi|86040113|gb|DR335868.1|DR335868
EST:     GCCAGAAGCTGGTGTTGAAGGGCTCAATATCCGCCGATAACGCCGCTCAG                         CTTATTGGGAAAACTCCGATGG
genomic: GCCAGAAGCTGGTGTTGAAGGGCTCAATATC-GCCGATAACGCCGCTCAGgttagattgt ... attgattcagCTTATTGGGAAAACTCCGATGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTCAAGAGACAGAGCCGGAGTGATGTTGTGTGCAAGGCTGTATCTATCAAGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAGgttagattgtgtttcgtttgcatttggatagagacagaggaaatctaaattggtgatcaattttgtcaatttaggggaagatataaactaactgagtattattagtcttgtaaatttgacttctttgaattttgatttcgtttctaatttttttatattctttctgaatgttatgaattgattcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG