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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttttaactttttgccttagatttttgtttgaatttgtttcatgtagctccatgcttgatatgtgttgattcttttgtagGTTACAAGCGTAAAATTTGTAGGCGACTCTGATCTTGTTTTGACTGCTTCTGCTGACAAG

Basic information

species Arabidopsis thaliana
transcript AT2G33340.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116465161|gb|EG507753.1|EG507753
EST:     ATCGCCCTTCTGGACAAATCTTGTCAACACTGACTGGTCACTCGAAGAAG                         GTTACAAGCGTAAAATTTGTAGGCGACTCTGATCTTGTTTTGACTGCTTCT
genomic: ATCGCCCTTCTGGACAAATCTTGTCAACACTGACTGGTCACTCGAAGAAGgtttttaact ... tcttttgtagGTTACAAGCGTAAAATTTGTAGGCGACTCTGATCTTGTTTTGACTGCTTCT
EST: gi|116472806|gb|EG515398.1|EG515398
EST:     ATCGCCCTTCTGGACAAATCTTGTCAACACTGACTGGTCACTCGAAGAAG                         -TTACAAGCGTAAAATTTGTAGGCGACTCTGATCTT
genomic: ATCGCCCTTCTGGACAAATCTTGTCAACACTGACTGGTCACTCGAAGAAGgtttttaact ... tcttttgtagGTTACAAGCGTAAAATTTGTAGGCGACTCTGATCTT
EST: gi|86059921|gb|DR355678.1|DR355678
EST:     ATCGCCCTTCTGGACAAATCTTGTCAACACTGACTGGTCACTCGAAGAAG                         GTTACAAGCGTAAAATTTGTAGGCGACTCTGATCTTGTTTTGACTGCTTCT
genomic: ATCGCCCTTCTGGACAAATCTTGTCAACACTGACTGGTCACTCGAAGAAGgtttttaact ... tcttttgtagGTTACAAGCGTAAAATTTGTAGGCGACTCTGATCTTGTTTTGACTGCTTCT
EST: gi|124932360|gb|EL009628.1|EL009628
EST:     ATCGCCCTTCTGGACAAATCTTGTCAACACTGACTGGTCACTCGAAGAAG                         GTTACAAGCGTAAAATTTGTAGGCGACTCTGATCTT
genomic: ATCGCCCTTCTGGACAAATCTTGTCAACACTGACTGGTCACTCGAAGAAGgtttttaact ... tcttttgtagGTTACAAGCGTAAAATTTGTAGGCGACTCTGATCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttgaatttgtttcatgtagctccatgcttgatatgtgttgattcttttgtagGTTACAAGCGTAAAATTTGTAGGCGACTCTGATCTTGTTTTGACTGCTTCTGCTGACAAG
                                      tgttgat  putative branch site (score: 4)
                                            ttcttttgt  CT-rich tract
      aatttgttt  TA-rich tract