1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...cttttgggcaccaatgagatccgatctccagtgagagctcttttagattatcacgccacttggaaatgaatgatttcttctaaattattttcctctgtagGATTATGGGAAGTGCCCGGTTACTGGCGAACCACTTACCATTGATGACATTGTTCCCATCAAAACTGGGGAG
species | Arabidopsis thaliana |
transcript | AT2G33340.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGAAGTCAGGATTACTCTTCGAGAGACGACTAATCGAAAGACATATATCG GATTATGGGAAGTGCCCGGTTACTGGCGAACCACTTACCATTGATGACATTEST: gi|152034150|gb|BP868786.2|BP868786
genomic: CGAAGTCAGGATTACTCTTCGAGAGACGACTAATCGAAAGACATATATCGgtaagctttg ... tcctctgtagGATTATGGGAAGTGCCCGGTTACTGGCGAACCACTTACCATTGATGACATT
EST: CGAAGTCAGGATTACTCTTCGAGAGACGACTAATCGAAAGACATATATCG GATTATGGGAAGTGCCCGGTTACTGGCGAACCACTTACCATTGATGACATTEST: gi|116472806|gb|EG515398.1|EG515398
genomic: -GAAGTCAGGATTACTCTTCGAGAGACGACTAATCGAAAGACATATATCGgtaagctttg ... tcctctgtagGATTATGGGAAGTGCCCGGTTACTGGCGAACCACTTACCATTGATGACATT
EST: CGAAGTCAGGATTACTCTTCGAGAGACGACTAATCGAAAGACATATATCG GATTATGGGAAGTGCCCGGTTACTGGCGAACCACTTACCATTGATGACATT
genomic: CGAAGTCAGGATTACTCTTCGAGAGACGACTAATCGAAAGACATATATCGgtaagctttg ... tcctctgtagGATTATGGGAAGTGCCCGGTTACTGGCGAACCACTTACCATTGATGACATT
gattatcacgccacttggaaatgaatgatttcttctaaattattttcctctgtagGATTATGGGAAGTGCCCGGTTACTGGCGAACCACTTACCATTGATGACATTGTTCCCATCAAAACTGGGGAG
ttctaaa putative branch site (score: 2)
ttattttcctctgt CT-rich tract
aaatgaatgatttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttttgggcaccaatgagatccgatctccagtgagagctcttttagattatcacgccacttggaaatgaatgatttcttctaaattattttcctctgtagGATTATGGGAAGTGCCCGGTTACTGGCGAACCACTTACCATTGATGACATTGTTCCCATCAAAACTGGGGAG
- - - - caccaat
- - - - - - - - - - - -atctcca
- - - - - - - - - - - - - - - - - - - - - - - - - -cacgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatgaa