Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTATGGGAAGTGCCCGGTTACTGGCGAACCACTTACCATTGATGACATTGTTCCCATCAAAACTGGGGAGgtagtgtaatctctttaactatttgatgcaaagtactgttgacgatatttgtttgagattttttaatgtaattgtcaattgtgtag

Basic information

species Arabidopsis thaliana
transcript AT2G33340.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G33340.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA10G26870.1 (Glycine max), 5'ss of exon 3
GATTATGGGAAGTGCCCGGTTACTGGCGAACCACTTACCATTGATGACATTGTTCCCATCAAAACTGGGGAGgta--gtg-taatctctttaactatttgatgcaaagtactgttgacgatatttgt-ttgagatt-----ttttaatgtaattgtcaattgtgtag---------------------------------------------------
|||||||||||||| ||  ||||||| ||||||||||| || ||||||||||| || ||||| || ||  |||||  ||| ||||    | |  | |  |||   || || ||     |   ||| | |  ||| |       | |   |   |||   |||  ||                                                    
GATTATGGGAAGTGTCCAATTACTGGAGAACCACTTACTATGGATGACATTGTACCAATCAAGACAGGCAAGgtatggtggtaatggaatcagttgtacgattttaa-tattgagttaggagtttatatcaagactaagcacctcatgtttgctgttctttgcttatcaagatttcagttgcaatgtactgattaaatcaggataatttattgtgcag

upper sequence: AT2G33340.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA20G21330.1 (Glycine max), 5'ss of exon 3
GATTATGGGAAGTGCCCGGTTACTGGCGAACCACTTACCATTGATGACATTGTTCCCATCAAAACTGGGGAGgta--gtg-taatctctttaactatttgatgcaaagtactgttgacgatatttgt-ttgagattt-----------tttaatgtaattgtcaattgtgtag------------------------------------------------
|||||||||||||| ||  ||||||| ||||||||||| || || |||||||| || ||||| || ||  |||||  ||| ||||    |||  | | |  |   || || ||    ||   ||| | |  ||| |            ||| ||||  || |    | |  |                                                 
GATTATGGGAAGTGTCCAATTACTGGAGAACCACTTACTATGGACGACATTGTACCAATCAAGACAGGCAAGgtatggtggtaatgaaattagttgtattgttttaa-tattgagtgcggagtttatatcaagactaagcgccccgtgtttgatgttgttctttgcttttcaagatttcagttgcaatgtactgattaaatcaggatcatttaccgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116444558|gb|EG487150.1|EG487150
EST:     CTGGCGAACCACTTACCATTGATGACATTGTTCCCATCAAAACTGGGGAG                         ATCATAAAGCCGAAAACATTGCATACAGCTAGTATCCCTGGATTGCTCGGA
genomic: CTGGCGAACCACTTACCATTGATGACATTGTTCCCATCAAAACTGGGGAGgtagtgtaat ... aattgtgtagATCATAAAGCCGAAAACATTGCATACAGCTAGTATCCCTGGATTGCTCGGA
EST: gi|152034150|gb|BP868786.2|BP868786
EST:     CTGGCGAACCACTTACCATTGATGACATTGTTCCCATCAAAACTGGGGAG                         ATCATAAAGCCGAAAACATTGCATACAGCTAGTATCCCTGGATTGCTCGGA
genomic: CTGGCGAACCACTTACCATTGATGACATTGTTCCCATCAAAACTGGGGAGgtagtgtaat ... aattgtgtagATCATAAAGCCGAAAACATTGCATACAGCTAGTATCCCTGGATTGCTCGGA
EST: gi|116472806|gb|EG515398.1|EG515398
EST:     CTGGCGAACCACTTACCATTGATGACATTGTTCCCATCAAAACTGGGGAG                         ATCATAAAGCCGAAAACATTGCATACAGCTAGTATCCCTGGATTGCTCGGA
genomic: CTGGCGAACCACTTACCATTGATGACATTGTTCCCATCAAAACTGGGGAGgtagtgtaat ... aattgtgtagATCATAAAGCCGAAAACATTGCATACAGCTAGTATCCCTGGATTGCTCGGA