1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
TGGAGTTTGATCCTAGCGGATCTTATCTCGGTATTGCTGCATCAGATATCAAgtgagtacacatttgaaaatagtgatcaaaacatccaaagctcagctaaagaaaatatccaaagagaccaagctagcttgattaatctgcacgttgggttaacacaatttatgtgttttggctgcag
species | Arabidopsis thaliana |
transcript | AT2G33340.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: TTATCTCGGTATTGCTGCATCAGATATCAA AGTATACCAGACGGCAAGTGTGAAAGCTGAATGGAACCTTATCAAGACACTEST: gi|124924079|gb|EL002208.1|EL002208
genomic: TTATCTCGGTATTGCTGCATCAGATATCAAgtgagtacac ... ttggctgcagAGTATACCAGACGGCAAGTGTGAAAGCTGAATGGAACCTTATCAAGACACT
EST: GAGTTTGATCCTAGCGGATCTTATCTCGGTATTGCTGCATCAGATATCAA AGTATACCAGAEST: gi|116444557|gb|EG487149.1|EG487149
genomic: GAGTTTGATCCTAGCGGATCTTATCTCGGTATTGCTGCATCAGATATCAAgtgagtacac ... ttggctgcagAGTATACCAGA
EST: GAGTTTGATCCTAGCGGATCTTATCTCGGTATTGCTGCATCAGATATCAA AGTATACCAGACGGCAAGTGTGAAAGCTGAATGGAACCTTATCAAGACACTEST: gi|124955811|gb|EL030793.1|EL030793
genomic: GAGTTTGATCCTAGCGGATCTTATCTCGGTATTGCTGCATCAGATATCAAgtgagtacac ... ttggctgcagAGTATACCAGACGGCAAGTGTGAAAGCTGAATGGAACCTTATCAAGACACT
EST: TCAGATATCAA AGTATACCAGACGGCAAGTGTGAAAGCTGAATGGAACCTTATCAAGACACT
genomic: TCAGATATCAAgtgagtacac ... ttggctgcagAGTATACCAGACGGCAAGTGTGAAAGCTGAATGGAACCTTATCAAGACACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGAGTTTGATCCTAGCGGATCTTATCTCGGTATTGCTGCATCAGATATCAAgtgagtacacatttgaaaatagtgatcaaaacatccaaagctcagctaaagaaaatatccaaagagaccaagctagcttgattaatctgcacgttgggttaacacaatttatgtgttttggctgcag
- - - - - - - - - - - - - - - - - TGCTGC