Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacacaactatcgtatctgtttctactcattttgttgatagagaactttctatgtattataagctcgctttgattaaacctactttttttttgtgtgcagTGGAGTTTGATCCTAGCGGATCTTATCTCGGTATTGCTGCATCAGATATCAA

Basic information

species Arabidopsis thaliana
transcript AT2G33340.1
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124924079|gb|EL002208.1|EL002208
EST:     TTTTTATCTGCAGATGCGAACTCTG                         TGGAGTTTGATCCTAGCGGATCTTATCTCGGTATTGCTGCATCAGATATCA
genomic: TTTTTATCTGCAGATGCGAACTCTGgtacacaact ... ttgtgtgcagTGGAGTTTGATCCTAGCGGATCTTATCTCGGTATTGCTGCATCAGATATCA
EST: gi|116444557|gb|EG487149.1|EG487149
EST:     GCGCAAGTTAAGGAACTTCAAATCATTTTTATCTGCAGATGCGAACTCTG                         TGGAGTTTGATCCTAGCGGATCTTATCTCGGTATTGCTGCATCAGATATCA
genomic: GCGCAAGTTAAGGAACTTCAAATCATTTTTATCTGCAGATGCGAACTCTGgtacacaact ... ttgtgtgcagTGGAGTTTGATCCTAGCGGATCTTATCTCGGTATTGCTGCATCAGATATCA
EST: gi|164027253|gb|ES033839.1|ES033839
EST:     GCGCAAGTTAAGGAACTTCAAATCATTTTTATCTGCAGATGCGAACTCTG                         TGGAGTTTGATCCTAGCGGATCTTATCTCGGTATTGC
genomic: GCGCAAGTTAAGGAACTTCAAATCATTTTTATCTGCAGATGCGAACTCTGgtacacaact ... ttgtgtgcagTGGAGTTTGATCCTAGCGGATCTTATCTCGGTATTGC
EST: gi|86059921|gb|DR355678.1|DR355678
EST:     GCGCAAGTTAAGGAACTTCAAATCATTTTTATCTGCAGATGCGAACTCTG                         TGGAGTTTGATCCCTAGCG-ATCTTATCTCGGTATTGCTGCATCAGATA
genomic: GCGCAAGTTAAGGAACTTCAAATCATTTTTATCTGCAGATGCGAACTCTGgtacacaact ... ttgtgtgcagTGGAGTTTGATCC-TAGCGGATCTTATCTCGGTATTGCTGCATCAGATA
EST: gi|125206554|gb|EL221508.1|EL221508
EST:     CAAATCATTTTTTATCTGCAGATGCGAACTCTG                         TGGAGTTTGATCCTAGCGGATCTTATCTCGGTATTGCTGCATCAGATATCA
genomic: CAAATCA-TTTTTATCTGCAGATGCGAACTCTGgtacacaact ... ttgtgtgcagTGGAGTTTGATCCTAGCGGATCTTATCTCGGTATTGCTGCATCAGATATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttctatgtattataagctcgctttgattaaacctactttttttttgtgtgcagTGGAGTTTGATCCTAGCGGATCTTATCTCGGTATTGCTGCATCAGATATCAA
                      ctttgat  putative branch site (score: 5)
                                 cctactttttttttgt  putative PPT
                                   tactttttttttgt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacacaactatcgtatctgtttctactcattttgttgatagagaactttctatgtattataagctcgctttgattaaacctactttttttttgtgtgcagTGGAGTTTGATCCTAGCGGATCTTATCTCGGTATTGCTGCATCAGATATCAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC