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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggatgaatttgaggaactcttacagtccgttccatgttcttttaattcatatactttttgtgtaactttagttaatgatgctttattcagGTGCGAGCTGTAACTGTGCATCCCACAAATAAATACTTTGTCTCGGCATCTCTTGATGGTACATGGTGCTTCTACGATCTGTCCTCTGGCTCATGCCTTG

Basic information

species Arabidopsis thaliana
transcript AT2G33340.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G33340.3 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: Vv05s0049g01840.t01 (Vitis vinifera), 3'ss of exon 11
gtaaggatgaatttgaggaactcttacagtccgttccatgttcttttaattcatatactttttgtgtaactttagt------taatgat--gctttattcagGTGCGAGCTGTAACTGTGCATCCCACAAATAAATACTTTGTCTCGGCATCTCTTGATGGTACATGGTGCTTCTACGATCTGTCCTCTGGCTCATGCCTTG
    |  || || |       | ||  | |   |   ||| | || |  || |   || ||     ||| |  ||       || | ||   || |  |||||||| |||||| || || ||| |||||||||| ||||||||  | || ||||| |||  |||||||||||| || ||||| || ||||| | ||| ||  
--ttgtctgtatctagctctatattgtactggttcttatggtattctgttttaagcaccttcaacataattcaagaatgacatatttatcaactcttgtcagGTGCAAGCTGTCACGGTCCATGCCACAAATAACTACTTTGTGACTGCTTCTCTGGATAATACATGGTGCTTTTATGATCTTTCATCTGGTTTATGTCTGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164218029|gb|ES024485.1|ES024485
EST:     GGATGGGAATTATGCTTGTGGGTATACATTGAATTGATCATTCTGCGGAG                         GTGCGAGCTGTAACTGTGCATCCCAC
genomic: GGATGGGAATTATGCTTGTGGGTATACATTGAA-TGATCATTCTGCGGAGgtaaggatga ... ctttattcagGTGCGAGCTGTAACTGTGCATCCCAC
EST: gi|116465161|gb|EG507753.1|EG507753
EST:     GGGATGGGAATTATGCTTGTGGGTATACATTGAATGATCATTCTGCGGAG                         GTGCGAGCTGTAACTGTGCATCCCACAAATAAATACTTTGTCTCGGCATCT
genomic: GGGATGGGAATTATGCTTGTGGGTATACATTGAATGATCATTCTGCGGAGgtaaggatga ... ctttattcagGTGCGAGCTGTAACTGTGCATCCCACAAATAAATACTTTGTCTCGGCATCT
EST: gi|125254740|gb|EL268825.1|EL268825
EST:     GATCATTCTGCGGAG                         GTGCGAGCTGTAACTGTGCATCCCACAAATAAATACTTTGTCTCGGCATCT
genomic: GATCATTCTGCGGAGgtaaggatga ... ctttattcagGTGCGAGCTGTAACTGTGCATCCCACAAATAAATACTTTGTCTCGGCATCT
EST: gi|86059921|gb|DR355678.1|DR355678
EST:     GGGATGGGAATTATGCTTGTGGGTATACATTGAATGATCATTCTGCGGAG                         GTGCGAGCTGTAACTGTGCATCCCACAAATAAATACTTTGTCTCGGCATCT
genomic: GGGATGGGAATTATGCTTGTGGGTATACATTGAATGATCATTCTGCGGAGgtaaggatga ... ctttattcagGTGCGAGCTGTAACTGTGCATCCCACAAATAAATACTTTGTCTCGGCATCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttcttttaattcatatactttttgtgtaactttagttaatgatgctttattcagGTGCGAGCTGTAACTGTGCATCCCACAAATAAATACTTTGTCTCGGCATCTCTTGATGGTACATGGTGCTTCTACGATCTGTCCTCTGGCTCATGCCTTG
                                             ctttattc  CT-rich tract
     tttaattcatatactt  TA-rich tract