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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAATGTGGCTAAGTTTGATGGACACACTGGGGAAGTTACAGCTATATCTTTCTCTGAAAATGGTTACTTCCTCGCGgtgagtactttgaacaaaatacgagaagagagaatacagcttaagttatgcttacatgaatgattttctttttgtcctggaattgacag

Basic information

species Arabidopsis thaliana
transcript AT2G33340.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G33340.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: LOC_Os10g32880.1 (Oryza sativa), 5'ss of exon 12
GCAAATGTGGCTAAGTTTGATGGACACACTGGGGAAGTTACAGCTATATCTTTCTCTGAAAATGGTTACTTCCTCGCGgtgagtactttgaacaaaatacgagaag-agagaatacagcttaagttatgcttacatgaatgattttctttttgtcctggaattgacag
 ||||||| || |||||||| || ||   |||   ||| || ||||| || ||||||||||||||||||||||| |||||  | |  |    || | | | |   | | |   |  |  ||   || |  |   ||  ||| | |  |   ||| | |          
TCAAATGTTGCAAAGTTTGAGGGGCATGTTGGACCAGTGACTGCTATGTCCTTCTCTGAAAATGGTTACTTCCTTGCGgtatgaatctctc-catagtgcaatctgcaaaatgttgaatttcttttttattctgatatatg-tatcatcactgtacag----------

upper sequence: AT2G33340.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GRMZM2G324540_T01 (Zea mays), 5'ss of exon 14
GCAAATGTGGCTAAGTTTGATGGACACACTGGGGAAGTTACAGCTATATCTTTCTCTGAAAATGGTTACTTCCTCGCGgtgagtactttgaacaaaatacgagaagagagaatacagcttaagttatgcttacatgaatgattttctttttgtcctggaattgacag
 ||||||| || |||||||| || ||    ||   ||| || ||||| |||||||||||||||||||||||||| |||||  ||| |||  | ||||  | |   |    |  |||  || | |||   |   ||   |   |  ||||                  
TCAAATGTCGCAAAGTTTGAGGGTCATGTCGGACCAGTCACTGCTATGTCTTTCTCTGAAAATGGTTACTTCCTAGCGgtacgtaatttagataaaa-gctacgtgcacaatgacaaatttatttagtttctaatatttccatcactttacag--------------

upper sequence: AT2G33340.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: AC205703.4_FGT004 (Zea mays), 5'ss of exon 4
GCAAATGTGGCTAAGTTTGATGGACACACTGGGGAAGTTACAGCTATATCTTTCTCTGAAAATGGTTACTTCCTCGCGgtgagtactttgaacaaaatacgagaagagagaatacagcttaagttatgcttacatgaatgattttctttttgtcctggaattgacag
 ||||| | || |||||||| || ||    ||    || || | ||| |||||||||||||||||||||||||| |||||  ||| |||  | ||||  | |   |    |  |||  || | |||   |   ||   |   |  ||||                  
TCAAATATCGCAAAGTTTGAGGGTCATGTCGGACCGGTCACTGTTATGTCTTTCTCTGAAAATGGTTACTTCCTAGCGgtacgtaatttagataaaa-gctacgtgcacaatgacaaatttatttagtttctaatatttccatcactttacag--------------

upper sequence: AT2G33340.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GRMZM2G037698_T02 (Zea mays), 5'ss of exon 14
GCAAATGTGGCTAAGTTTGATGGACACACTGGGGAAGTTACAGCTATATCTTTCTCTGAAAATGGTTACTTCCTCGCGgtgagtactttgaacaaaatacgagaagagagaatacagcttaagttatgcttacatgaatgattttctttttgtcctggaattgacag
 | ||||| || |||||||| || ||    ||   ||| || ||||| || ||||||||||||||||||||||| |||||  ||| |||  | ||||     |   | ||  |  || ||  |||  ||||  |   || |||||    |     || |        
TCGAATGTCGCGAAGTTTGAGGGGCATGTAGGACCAGTCACTGCTATGTCCTTCTCTGAAAATGGTTACTTCCTAGCGgtatgtaatttagataaaagctatgtgcacagtgttaagttt--gtttagcttcta---at-attttgccatcactttgcag-------

upper sequence: AT2G33340.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA10G26870.1 (Glycine max), 5'ss of exon 14
GCAAATGTGGCTAAGTTTGATGGACACACTGGGGAAGTTACAGCTATATCTTTCTCTGAAAATGGTTACTTCCTCGCGgtgagtactttgaacaaaatacgagaagagagaatacagcttaagttatgcttacatgaatgattttctttttgtcctggaattg-acag
|||||||| |||| ||||||||||||  |||||  ||| || || |||||||||||||| ||||| |||||||| |||||  | |      | |||||   |  ||  || ||   | ||   |||| |       | |  ||||  || | | ||  ||||  ||||
GCAAATGTTGCTAGGTTTGATGGACATGCTGGGCCAGTAACTGCCATATCTTTCTCTGAGAATGGATACTTCCTTGCGgtatgca------agaaaatgtaacgagtaagtatgatgattgttttatac-------agtatttttaattgtattcttaaattctacag

upper sequence: AT2G33340.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA20G21330.1 (Glycine max), 5'ss of exon 14
GCAAATGTGGCTAAGTTTGATGGACACACTGGGGAAGTTACAGCTATATCTTTCTCTGAAAATGGTTACTTCCTCGCGgtgagtactttgaacaaaatacgagaagagagaatacagcttaagttatgcttacatgaatgattttctttttgtcctggaattgacag
|||||||| |||| |||||| |||||  |||||  ||| || || |||||||||||||| ||||| |||||||| |||||  ||       | |||||   |  ||      || ||  | |    || ||| |  | |  | || || |  || |  | |||||||
GCAAATGTTGCTAGGTTTGACGGACATGCTGGGCCAGTAACTGCCATATCTTTCTCTGAGAATGGATACTTCCTTGCGgtatgtg------agaaaatgtaactag------taaagtatgatgattgtttatac-agtattcttattgtactcttaaatttgacag

upper sequence: AT2G33340.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: Vv05s0049g01840.t01 (Vitis vinifera), 5'ss of exon 14
GCAAATGTGGCTAAGTTTGATGGACACACTGGGGAAGTTACAGCTATATCTTTCTCTGAAAATGGTTACTTCCTCGCGgtgagtactttgaacaaaatacgagaagagagaatacagcttaagttatgcttacatgaatgattttctttttgtcctggaattgacag
||||||||||| |  ||||| || |||  |||||  || || |||||||||||||| ||||||||||||||||| |||||  ||  |||   |  |||   ||||| |   ||       |||| |    |||||   ||||||| | |   |  ||   ||     
GCAAATGTGGCAAGATTTGACGGGCACGTTGGGGCTGTAACTGCTATATCTTTCTCAGAAAATGGTTACTTCCTTGCGgtatgtgtttt---cctaatt--agaagtgtatatgtgagg-aagtgaca--tacatttctgattttttatgcttgatgtttttag---

upper sequence: AT2G33340.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: PP1S64_187V6.1 (Physcomitrella patens), 5'ss of exon 14
GCAAATGTGGCTAAGTTTGATGGACACACTGGGGAAGTTACAGCTATATCTTTCTCTGAAAATGGTTACTTCCTCGCGgtgagtactttgaacaaaa-tacgagaagagagaatacagcttaagttatgcttacatgaatgattttctttttgtcctggaattgacag------------
|| ||||| || |||||||| || ||||| ||    || || | |||||||||||||||||||||||||||  | || || |||  |   | |   | ||||       | |||  | |  |||  ||  |||  | | |  |  |   | |   |||  |   || |            
GCCAATGTTGCCAAGTTTGAAGGGCACACAGGACCCGTGACGGATATATCTTTCTCTGAAAATGGTTACTTTTTGGCTgtaagttttcccatcttcactacgccgttttataatgtaac--aagagatcgttattttactattgcttaatgtccactgagacgaactgtcccgacacttg

upper sequence: AT2G33340.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: EFJ38655 (Selaginella moellendorffii), 5'ss of exon 14
GCAAATGTGGCTAAGTTTGATGGACACACTGGGGAAGTTACAGCTATATCTTTCTCTGAAAATGGTTACTTCCTCGCGgtgagtactttgaacaaaatacgagaagagagaatacagcttaagttatgcttacatgaatgattttctttttgtcctggaattgacag
   || || || |||||||| |||||| |||||   || || |   |||| ||||||||||||||||||||||| || |||||| |||   |   | |       | | |      | | || |  | |   | ||                               
AACAACGTTGCCAAGTTTGAAGGACACTCTGGGCCCGTGACTGAACTATCGTTCTCTGAAAATGGTTACTTCCTGGCTgtgagtgcttccgagttattgtttttggtgcg----ttgttaaactcgtacgc-cgtgtgcag--------------------------

upper sequence: AT2G33340.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: EFJ31494 (Selaginella moellendorffii), 5'ss of exon 14
GCAAATGTGGCTAAGTTTGATGGACACACTGGGGAAGTTACAGCTATATCTTTCTCTGAAAATGGTTACTTCCTCGCGgtgagtactttgaacaaaatacgagaagagagaatacagcttaagttatgcttacatgaatgattttctttttgtcctggaattgacag
   || || || |||||||| |||||| |||||   || || |   |||| ||||||||||||||||||||||| || |||||| |||   |   | |       | | |      | | || |  | |   | ||                               
AACAACGTTGCCAAGTTTGAAGGACACTCTGGGCCCGTGACTGAACTATCGTTCTCTGAAAATGGTTACTTCCTGGCTgtgagtgcttccgagttattgtttttggtgcg----ttgttaaactcgtacgc-cctgtgcag--------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116444557|gb|EG487149.1|EG487149
EST:     CTGGGGAAGTTACAGCTATATCTTTCTCTGAAAATGGTTACTTCCTCGCG                         ACAGCTGCAGAGGATGGTGTTAGGTTGTGGGATCTGCGCAAGTTAAGGAAC
genomic: CTGGGGAAGTTACAGCTATATCTTTCTCTGAAAATGGTTACTTCCTCGCGgtgagtactt ... gaattgacagACAGCTGCAGAGGATGGTGTTAGGTTGTGGGATCTGCGCAAGTTAAGGAAC
EST: gi|116465161|gb|EG507753.1|EG507753
EST:     GGGGGAAGTTACAGCTATATCTTTCTCTGAAAATGGGTTACTTCCTCGCG                         ACAGCTGCAGAGGGATGGTG
genomic: GGGG-AAGTTACAGCTATATCTTTCTCTGAAAATGG-TTACTTCCTCGCGgtgagtactt ... gaattgacagACAGCTGCAGAGG-ATGGTG
EST: gi|125267436|gb|EL281521.1|EL281521
EST:     CTGGGGAAGTTACAGCTATATCTTTCTCTGAAAATGGTTACTTCCTCGCG                         ACAGCTGCAGAGGATGGTGTTAGGTTGTGGGATCTGCGCAAGTTAAGGAAC
genomic: CTGGGGAAGTTACAGCTATATCTTTCTCTGAAAATGGTTACTTCCTCGCGgtgagtactt ... gaattgacagACAGCTGCAGAGGATGGTGTTAGGTTGTGGGATCTGCGCAAGTTAAGGAAC
EST: gi|86059921|gb|DR355678.1|DR355678
EST:     CTGGGGAAGTTACAGCTATATCTTTCTCTGAAAATGGTTACTTCCTCGCG                         ACAGCTGCAGAGGATGGTGTTAGGTTGTGGGATCTGCGCAAGTTAAGGAAC
genomic: CTGGGGAAGTTACAGCTATATCTTTCTCTGAAAATGGTTACTTCCTCGCGgtgagtactt ... gaattgacagACAGCTGCAGAGGATGGTGTTAGGTTGTGGGATCTGCGCAAGTTAAGGAAC