1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...agcattttcatatcagctaaaatccgtggttcggtgtatggttagagtacgagctcctttactcatgaaagcctttgtcatattccttgtttttattcagGTATCAGATGATTCAAAGAATGTAGATTACACGGCTGCTGCTTTTCATCCCGATGGTCTCATTCTCGGAACCGGTACTTCTCAATCTGTTGTTAAGATTT
species | Arabidopsis thaliana |
transcript | AT2G33340.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ATGGTACATGGTGCTTCTACGATCTGTCCTCTGGCTCATGCCTTGCACAG GTATCAGATGATTCAAAGAATGTAGATTACACGGCTGCTGCTTTTCATCCCEST: gi|86059921|gb|DR355678.1|DR355678
genomic: ATGGTACATGGTGCTTCTACGATCTGTCCTCTGGCTCATGCCTTGCACAGgtccctaaac ... ttttattcagGTATCAGATGATTCAAAGAATGTAGATTACACGGCTGCTGCTTTTCATCCC
EST: ATGGTACATGGTGCTTCTACGATCTGTCCTCTGGCTCATGCCTTGCACAG GTATCAGATGATTCAAAGAATGTAGATTACACGGCTGCTGCTTTTCATCCCEST: gi|125209236|gb|EL224190.1|EL224190
genomic: ATGGTACATGGTGCTTCTACGATCTGTCCTCTGGCTCATGCCTTGCACAGgtccctaaac ... ttttattcagGTATCAGATGATTCAAAGAATGTAGATTACACGGCTGCTGCTTTTCATCCC
EST: ACGATCTGTCCTCTGGCTCATGCCTTGCACAG GTATCAGATGATCCAAAGAATGTAGATTACACGGCTG
genomic: ACGATCTGTCCTCTGGCTCATGCCTTGCACAGgtccctaaac ... ttttattcagGTATCAGATGATTCAAAGAATGTAGATTACACGGCTG
agtacgagctcctttactcatgaaagcctttgtcatattccttgtttttattcagGTATCAGATGATTCAAAGAATGTAGATTACACGGCTGCTGCTTTTCATCCCGATGGTCTCATTCTCGGAACCGGTACTTCTCAATCTGTTGTTAAGATTT
ttccttgtttttattc CT-rich tract
ttgtttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcattttcatatcagctaaaatccgtggttcggtgtatggttagagtacgagctcctttactcatgaaagcctttgtcatattccttgtttttattcagGTATCAGATGATTCAAAGAATGTAGATTACACGGCTGCTGCTTTTCATCCCGATGGTCTCATTCTCGGAACCGGTACTTCTCAATCTGTTGTTAAGATTT
- - - - - - - - - aaaatcc
- - - - - - - - - - - - - -ggttcgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaaagc