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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactatttcttttatgcaatgaataatgtatttatatgaagttttcatcaatattacacaaatgaatacacatgcactacaaaagcattattgttaatatcaatgttacagGGTGAAATTTTAGGATGTCGACGAAGAAGTTACCCAAGTCGATTTGAATTTGGACAATCATCATCATCTTCGGCTCAACGAAGG

Basic information

species Arabidopsis thaliana
transcript AT1G77960.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116391436|gb|EG434028.1|EG434028
EST:     ATCGTCAGGCCCCTGTACGTCCAAACGCAAACGCAATCATACCCCCACAG                         GGTGAAATTTTAGGATGTCGACGAAGAAGTTACCCAAGTCGATTTGAATTT
genomic: ATCGTCAGGCCCCTGTACGTCCAAACGCAAACGCAATCATACCCCCACAGgtactatttc ... aatgttacagGGTGAAATTTTAGGATGTCGACGAAGAAGTTACCCAAGTCGATTTGAATTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacaaatgaatacacatgcactacaaaagcattattgttaatatcaatgttacagGGTGAAATTTTAGGATGTCGACGAAGAAGTTACCCAAGTCGATTTGAATTTGGACAATCATCATCATCTTCGGCTCAACGAAGG
                                   tgttaat  putative branch site (score: 3)
                              attattgttaatatca  TA-rich tract