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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttattttttctccatttttttctattgacttatcacacatttttcaaatatttgtttcatatatatactctgccttttttttatttattaatctgatacagttaactagttaagtaatcataggtaatatatctcaaaattattcttaggaacataacaagagcatccatttttcagGGGCACAAATACTATATACGATCCAAGATACGAAAGCTTCGGTTTATGTATTGATCCACACTTGAGAAAGTATGCTATGACGCTATAACAG

Basic information

species Arabidopsis thaliana
transcript AT1G77960.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116391353|gb|EG433945.1|EG433945
EST:     AGCGAAAATGTTGGCTCAACTTCAATCAATCATGGAAATGCTGAACAAAG                         GGGCACAAATACTATATACGATCCAAGATACGAAAGATTCGGTTTATGTAT
genomic: AGCGAAAATGTTGGCTCAACTTCAATCAATCATGGAAATGCTGAACAAAGgttatttttt ... catttttcagGGGCACAAATACTATATACGATCCAAGATACGAAAGCTTCGGTTTATGTAT
EST: gi|116391436|gb|EG434028.1|EG434028
EST:     AGCGAAAATGTTGGCTCAACTTCAATCAATCATGGAAATGCTGAACAAAG                         GGGCACAAATACTATATACGATCCAAGATACGAAAGCTTCGGTTTATGTAT
genomic: AGCGAAAATGTTGGCTCAACTTCAATCAATCATGGAAATGCTGAACAAAGgttatttttt ... catttttcagGGGCACAAATACTATATACGATCCAAGATACGAAAGCTTCGGTTTATGTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtaatatatctcaaaattattcttaggaacataacaagagcatccatttttcagGGGCACAAATACTATATACGATCCAAGATACGAAAGCTTCGGTTTATGTATTGATCCACACTTGAGAAAGTATGCTATGACGCTATAACAG
                             acataac  putative branch site (score: 3)
                                           tccatttttc  putative PPT
     tatatctcaaaattat  TA-rich tract